Strain Fitness in Xanthobacter sp. DMC5 around GFF4694

Experiment: D,L-Lactate and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4693 and GFF4694 are separated by 57 nucleotidesGFF4694 and GFF4695 overlap by 4 nucleotidesGFF4695 and GFF4696 are separated by 17 nucleotides GFF4693 - Protein FdhE, at 103,469 to 104,434 GFF4693 GFF4694 - Formate dehydrogenase, cytochrome b556(fdo) subunit, at 104,492 to 105,190 GFF4694 GFF4695 - Formate dehydrogenase-O iron-sulfur subunit, at 105,187 to 106,143 GFF4695 GFF4696 - Formate dehydrogenase-O major subunit, at 106,161 to 108,599 GFF4696 Position (kb) 104 105 106Strain fitness (log2 ratio) -2 -1 0 1 2at 103.594 kb on - strand, within GFF4693at 103.594 kb on - strand, within GFF4693at 103.594 kb on - strand, within GFF4693at 103.608 kb on + strand, within GFF4693at 103.609 kb on - strand, within GFF4693at 103.719 kb on + strand, within GFF4693at 103.720 kb on - strand, within GFF4693at 103.826 kb on + strand, within GFF4693at 103.826 kb on + strand, within GFF4693at 103.826 kb on + strand, within GFF4693at 103.826 kb on + strand, within GFF4693at 103.827 kb on - strand, within GFF4693at 103.827 kb on - strand, within GFF4693at 103.911 kb on + strand, within GFF4693at 103.911 kb on + strand, within GFF4693at 103.912 kb on - strand, within GFF4693at 103.912 kb on - strand, within GFF4693at 104.235 kb on + strand, within GFF4693at 104.236 kb on - strand, within GFF4693at 104.317 kb on - strand, within GFF4693at 104.393 kb on - strandat 104.393 kb on - strandat 104.478 kb on + strandat 104.494 kb on - strandat 104.639 kb on + strand, within GFF4694at 104.640 kb on - strand, within GFF4694at 104.724 kb on + strand, within GFF4694at 104.724 kb on + strand, within GFF4694at 104.724 kb on + strand, within GFF4694at 104.724 kb on + strand, within GFF4694at 104.725 kb on - strand, within GFF4694at 104.725 kb on - strand, within GFF4694at 104.737 kb on - strand, within GFF4694at 104.779 kb on + strand, within GFF4694at 104.779 kb on + strand, within GFF4694at 104.780 kb on - strand, within GFF4694at 104.780 kb on - strand, within GFF4694at 104.780 kb on - strand, within GFF4694at 104.780 kb on - strand, within GFF4694at 104.823 kb on + strand, within GFF4694at 104.824 kb on - strand, within GFF4694at 104.824 kb on - strand, within GFF4694at 104.824 kb on - strand, within GFF4694at 104.824 kb on - strand, within GFF4694at 105.028 kb on - strand, within GFF4694at 105.120 kb on + strand, within GFF4694at 105.178 kb on - strandat 105.281 kb on + strandat 105.282 kb on - strandat 105.282 kb on - strandat 105.332 kb on + strand, within GFF4695at 105.332 kb on + strand, within GFF4695at 105.333 kb on - strand, within GFF4695at 105.333 kb on - strand, within GFF4695at 105.333 kb on - strand, within GFF4695at 105.399 kb on - strand, within GFF4695at 105.431 kb on + strand, within GFF4695at 105.431 kb on + strand, within GFF4695at 105.431 kb on + strand, within GFF4695at 105.432 kb on - strand, within GFF4695at 105.432 kb on - strand, within GFF4695at 105.432 kb on - strand, within GFF4695at 105.432 kb on - strand, within GFF4695at 105.467 kb on + strand, within GFF4695at 105.467 kb on + strand, within GFF4695at 105.467 kb on + strand, within GFF4695at 105.467 kb on + strand, within GFF4695at 105.467 kb on + strand, within GFF4695at 105.467 kb on + strand, within GFF4695at 105.468 kb on - strand, within GFF4695at 105.468 kb on - strand, within GFF4695at 105.468 kb on - strand, within GFF4695at 105.486 kb on - strand, within GFF4695at 105.635 kb on + strand, within GFF4695at 105.635 kb on + strand, within GFF4695at 105.636 kb on - strand, within GFF4695at 105.746 kb on + strand, within GFF4695at 105.746 kb on + strand, within GFF4695at 105.746 kb on + strand, within GFF4695at 105.917 kb on + strand, within GFF4695at 105.917 kb on + strand, within GFF4695at 105.918 kb on - strand, within GFF4695at 105.918 kb on - strand, within GFF4695at 105.918 kb on - strand, within GFF4695

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
remove
103,594 - GFF4693 0.13 -0.1
103,594 - GFF4693 0.13 -0.6
103,594 - GFF4693 0.13 +0.1
103,608 + GFF4693 0.14 -0.4
103,609 - GFF4693 0.14 +1.1
103,719 + GFF4693 0.26 +1.5
103,720 - GFF4693 0.26 +0.8
103,826 + GFF4693 0.37 +0.0
103,826 + GFF4693 0.37 +0.4
103,826 + GFF4693 0.37 +1.0
103,826 + GFF4693 0.37 -1.6
103,827 - GFF4693 0.37 +0.0
103,827 - GFF4693 0.37 +0.0
103,911 + GFF4693 0.46 -0.2
103,911 + GFF4693 0.46 +0.1
103,912 - GFF4693 0.46 +0.5
103,912 - GFF4693 0.46 +0.1
104,235 + GFF4693 0.79 -0.0
104,236 - GFF4693 0.79 -0.0
104,317 - GFF4693 0.88 -0.1
104,393 - +0.0
104,393 - -0.9
104,478 + +0.8
104,494 - -1.4
104,639 + GFF4694 0.21 -0.3
104,640 - GFF4694 0.21 +0.4
104,724 + GFF4694 0.33 -0.8
104,724 + GFF4694 0.33 +0.3
104,724 + GFF4694 0.33 -1.8
104,724 + GFF4694 0.33 +0.8
104,725 - GFF4694 0.33 -0.9
104,725 - GFF4694 0.33 +0.6
104,737 - GFF4694 0.35 +0.2
104,779 + GFF4694 0.41 -0.6
104,779 + GFF4694 0.41 +0.1
104,780 - GFF4694 0.41 -0.1
104,780 - GFF4694 0.41 +0.1
104,780 - GFF4694 0.41 -0.4
104,780 - GFF4694 0.41 +0.4
104,823 + GFF4694 0.47 +0.5
104,824 - GFF4694 0.47 -0.1
104,824 - GFF4694 0.47 -0.2
104,824 - GFF4694 0.47 +0.4
104,824 - GFF4694 0.47 +0.6
105,028 - GFF4694 0.77 +0.6
105,120 + GFF4694 0.90 +0.3
105,178 - -0.3
105,281 + -0.5
105,282 - -0.0
105,282 - -1.2
105,332 + GFF4695 0.15 +0.7
105,332 + GFF4695 0.15 -0.3
105,333 - GFF4695 0.15 +0.8
105,333 - GFF4695 0.15 +0.2
105,333 - GFF4695 0.15 -0.5
105,399 - GFF4695 0.22 -0.8
105,431 + GFF4695 0.25 -0.5
105,431 + GFF4695 0.25 +0.4
105,431 + GFF4695 0.25 +0.9
105,432 - GFF4695 0.26 -0.5
105,432 - GFF4695 0.26 -0.4
105,432 - GFF4695 0.26 +0.6
105,432 - GFF4695 0.26 +0.0
105,467 + GFF4695 0.29 -0.0
105,467 + GFF4695 0.29 +1.1
105,467 + GFF4695 0.29 -0.4
105,467 + GFF4695 0.29 +0.4
105,467 + GFF4695 0.29 +0.8
105,467 + GFF4695 0.29 -0.8
105,468 - GFF4695 0.29 +0.5
105,468 - GFF4695 0.29 +0.5
105,468 - GFF4695 0.29 +0.1
105,486 - GFF4695 0.31 +1.0
105,635 + GFF4695 0.47 +0.0
105,635 + GFF4695 0.47 +0.6
105,636 - GFF4695 0.47 -0.5
105,746 + GFF4695 0.58 +1.8
105,746 + GFF4695 0.58 -0.1
105,746 + GFF4695 0.58 -0.2
105,917 + GFF4695 0.76 -0.1
105,917 + GFF4695 0.76 -0.1
105,918 - GFF4695 0.76 +1.4
105,918 - GFF4695 0.76 +1.0
105,918 - GFF4695 0.76 +1.6

Or see this region's nucleotide sequence