Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF466 and GFF467 are separated by 15 nucleotides GFF467 and GFF468 overlap by 8 nucleotides GFF468 and GFF469 overlap by 4 nucleotides
GFF466 - hypothetical protein, at 492,889 to 493,734
GFF466
GFF467 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 493,750 to 494,463
GFF467
GFF468 - Lipopolysaccharide export system ATP-binding protein LptB, at 494,456 to 495,247
GFF468
GFF469 - hypothetical protein, at 495,244 to 496,245
GFF469
Position (kb) 494
495
496 Strain fitness (log2 ratio) -1
0
1
2 at 493.509 kb on - strand, within GFF466 at 493.655 kb on + strand at 493.656 kb on - strand at 493.656 kb on - strand at 493.656 kb on - strand at 493.694 kb on + strand at 493.694 kb on + strand at 493.695 kb on - strand at 493.725 kb on + strand at 493.726 kb on - strand at 493.842 kb on - strand, within GFF467 at 493.842 kb on - strand, within GFF467 at 494.484 kb on + strand at 494.552 kb on - strand, within GFF468 at 495.047 kb on + strand, within GFF468 at 495.395 kb on + strand, within GFF469 at 495.422 kb on + strand, within GFF469 at 495.422 kb on + strand, within GFF469 at 495.422 kb on + strand, within GFF469 at 495.423 kb on - strand, within GFF469 at 495.503 kb on + strand, within GFF469 at 495.504 kb on - strand, within GFF469 at 495.504 kb on - strand, within GFF469 at 495.521 kb on + strand, within GFF469 at 495.521 kb on + strand, within GFF469 at 495.522 kb on - strand, within GFF469 at 495.522 kb on - strand, within GFF469 at 495.863 kb on + strand, within GFF469 at 495.864 kb on - strand, within GFF469 at 495.864 kb on - strand, within GFF469 at 495.962 kb on + strand, within GFF469 at 495.990 kb on - strand, within GFF469 at 495.990 kb on - strand, within GFF469 at 495.990 kb on - strand, within GFF469 at 496.040 kb on + strand, within GFF469 at 496.107 kb on + strand, within GFF469 at 496.112 kb on + strand, within GFF469
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 493,509 - GFF466 0.73 -1.3 493,655 + +0.2 493,656 - +0.5 493,656 - +1.4 493,656 - -1.4 493,694 + -0.0 493,694 + +0.8 493,695 - -1.4 493,725 + +0.1 493,726 - +0.0 493,842 - GFF467 0.13 -0.4 493,842 - GFF467 0.13 -0.4 494,484 + +0.3 494,552 - GFF468 0.12 -0.4 495,047 + GFF468 0.75 +0.3 495,395 + GFF469 0.15 +0.4 495,422 + GFF469 0.18 +0.0 495,422 + GFF469 0.18 -0.4 495,422 + GFF469 0.18 +0.3 495,423 - GFF469 0.18 -0.7 495,503 + GFF469 0.26 +0.4 495,504 - GFF469 0.26 -0.6 495,504 - GFF469 0.26 -0.2 495,521 + GFF469 0.28 +0.6 495,521 + GFF469 0.28 +0.8 495,522 - GFF469 0.28 +1.0 495,522 - GFF469 0.28 +1.0 495,863 + GFF469 0.62 -0.2 495,864 - GFF469 0.62 -0.9 495,864 - GFF469 0.62 +0.4 495,962 + GFF469 0.72 +1.8 495,990 - GFF469 0.74 -0.1 495,990 - GFF469 0.74 -0.4 495,990 - GFF469 0.74 -1.0 496,040 + GFF469 0.79 -0.4 496,107 + GFF469 0.86 -0.1 496,112 + GFF469 0.87 -0.3
Or see this region's nucleotide sequence