Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4654 and GFF4655 are separated by 169 nucleotides GFF4655 and GFF4656 are separated by 30 nucleotides GFF4656 and GFF4657 overlap by 4 nucleotides GFF4657 and GFF4658 are separated by 197 nucleotides
GFF4654 - Ribosomal RNA large subunit methyltransferase J, at 62,995 to 63,867
GFF4654
GFF4655 - hypothetical protein, at 64,037 to 64,435
GFF4655
GFF4656 - Ribonuclease, at 64,466 to 65,158
GFF4656
GFF4657 - hypothetical protein, at 65,155 to 65,697
GFF4657
GFF4658 - Diaminopimelate decarboxylase, at 65,895 to 67,184
GFF4658
Position (kb) 64
65
66 Strain fitness (log2 ratio) -2
-1
0
1
2 at 63.609 kb on - strand, within GFF4654 at 63.609 kb on - strand, within GFF4654 at 63.728 kb on + strand, within GFF4654 at 63.789 kb on - strand at 63.789 kb on - strand at 63.861 kb on - strand at 63.930 kb on - strand at 64.238 kb on + strand, within GFF4655 at 64.239 kb on - strand, within GFF4655 at 64.239 kb on - strand, within GFF4655 at 64.307 kb on + strand, within GFF4655 at 64.307 kb on + strand, within GFF4655 at 64.308 kb on - strand, within GFF4655 at 64.308 kb on - strand, within GFF4655 at 64.308 kb on - strand, within GFF4655 at 64.308 kb on - strand, within GFF4655 at 64.308 kb on - strand, within GFF4655 at 64.373 kb on + strand, within GFF4655 at 64.373 kb on + strand, within GFF4655 at 64.683 kb on + strand, within GFF4656 at 64.752 kb on + strand, within GFF4656 at 64.753 kb on - strand, within GFF4656 at 64.800 kb on + strand, within GFF4656 at 64.800 kb on + strand, within GFF4656 at 64.800 kb on + strand, within GFF4656 at 64.801 kb on - strand, within GFF4656 at 64.801 kb on - strand, within GFF4656 at 64.864 kb on - strand, within GFF4656 at 64.906 kb on - strand, within GFF4656 at 64.998 kb on + strand, within GFF4656 at 64.999 kb on - strand, within GFF4656 at 64.999 kb on - strand, within GFF4656 at 64.999 kb on - strand, within GFF4656 at 65.029 kb on - strand, within GFF4656 at 65.029 kb on - strand, within GFF4656 at 65.193 kb on - strand at 65.270 kb on + strand, within GFF4657 at 65.271 kb on - strand, within GFF4657 at 65.271 kb on - strand, within GFF4657 at 65.273 kb on + strand, within GFF4657 at 65.273 kb on + strand, within GFF4657 at 65.273 kb on + strand, within GFF4657 at 65.274 kb on - strand, within GFF4657 at 65.274 kb on - strand, within GFF4657 at 65.492 kb on + strand, within GFF4657 at 65.493 kb on - strand, within GFF4657 at 65.493 kb on - strand, within GFF4657 at 65.737 kb on - strand at 65.796 kb on + strand at 65.796 kb on + strand at 66.015 kb on + strand at 66.015 kb on + strand at 66.016 kb on - strand at 66.016 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 63,609 - GFF4654 0.70 -0.1 63,609 - GFF4654 0.70 +0.2 63,728 + GFF4654 0.84 +0.4 63,789 - +0.0 63,789 - -1.6 63,861 - -1.0 63,930 - -1.5 64,238 + GFF4655 0.50 -0.3 64,239 - GFF4655 0.51 -0.9 64,239 - GFF4655 0.51 +1.3 64,307 + GFF4655 0.68 +1.0 64,307 + GFF4655 0.68 -0.0 64,308 - GFF4655 0.68 +0.3 64,308 - GFF4655 0.68 +0.5 64,308 - GFF4655 0.68 +0.2 64,308 - GFF4655 0.68 -0.4 64,308 - GFF4655 0.68 -0.1 64,373 + GFF4655 0.84 +0.1 64,373 + GFF4655 0.84 +0.4 64,683 + GFF4656 0.31 +1.6 64,752 + GFF4656 0.41 +0.1 64,753 - GFF4656 0.41 +0.1 64,800 + GFF4656 0.48 -0.3 64,800 + GFF4656 0.48 +0.3 64,800 + GFF4656 0.48 -0.1 64,801 - GFF4656 0.48 +0.3 64,801 - GFF4656 0.48 -0.2 64,864 - GFF4656 0.57 -0.7 64,906 - GFF4656 0.63 +0.8 64,998 + GFF4656 0.77 +1.0 64,999 - GFF4656 0.77 -0.3 64,999 - GFF4656 0.77 -1.0 64,999 - GFF4656 0.77 +2.4 65,029 - GFF4656 0.81 +0.1 65,029 - GFF4656 0.81 -0.4 65,193 - -0.3 65,270 + GFF4657 0.21 +0.1 65,271 - GFF4657 0.21 -0.3 65,271 - GFF4657 0.21 -0.3 65,273 + GFF4657 0.22 +0.5 65,273 + GFF4657 0.22 -0.2 65,273 + GFF4657 0.22 +0.4 65,274 - GFF4657 0.22 +0.7 65,274 - GFF4657 0.22 +0.2 65,492 + GFF4657 0.62 -0.3 65,493 - GFF4657 0.62 +0.1 65,493 - GFF4657 0.62 -1.1 65,737 - -0.7 65,796 + -2.1 65,796 + -1.6 66,015 + -1.3 66,015 + +0.5 66,016 - +1.3 66,016 - +1.5
Or see this region's nucleotide sequence