Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4644 and GFF4645 are separated by 188 nucleotides GFF4645 and GFF4646 overlap by 4 nucleotides GFF4646 and GFF4647 are separated by 74 nucleotides GFF4647 and GFF4648 are separated by 28 nucleotides
GFF4644 - hypothetical protein, at 54,631 to 55,068
GFF4644
GFF4645 - dTTP/UTP pyrophosphatase, at 55,257 to 55,877
GFF4645
GFF4646 - DNA gyrase inhibitor YacG, at 55,874 to 56,080
GFF4646
GFF4647 - hypothetical protein, at 56,155 to 57,033
GFF4647
GFF4648 - hypothetical protein, at 57,062 to 57,700
GFF4648
Position (kb) 55
56
57 Strain fitness (log2 ratio) -1
0
1 at 54.878 kb on - strand, within GFF4644 at 54.936 kb on - strand, within GFF4644 at 55.952 kb on + strand, within GFF4646 at 55.952 kb on + strand, within GFF4646 at 56.015 kb on + strand, within GFF4646 at 56.016 kb on - strand, within GFF4646 at 56.016 kb on - strand, within GFF4646 at 56.182 kb on + strand at 56.183 kb on - strand at 56.217 kb on + strand at 56.217 kb on + strand at 56.217 kb on + strand at 56.217 kb on + strand at 56.217 kb on + strand at 56.218 kb on - strand at 56.218 kb on - strand at 56.249 kb on + strand, within GFF4647 at 56.249 kb on + strand, within GFF4647 at 56.249 kb on + strand, within GFF4647 at 56.250 kb on - strand, within GFF4647 at 56.275 kb on + strand, within GFF4647 at 56.275 kb on + strand, within GFF4647 at 56.276 kb on - strand, within GFF4647 at 56.276 kb on - strand, within GFF4647 at 56.342 kb on - strand, within GFF4647 at 56.441 kb on + strand, within GFF4647 at 56.442 kb on - strand, within GFF4647 at 56.442 kb on - strand, within GFF4647 at 56.505 kb on + strand, within GFF4647 at 56.548 kb on + strand, within GFF4647 at 56.549 kb on - strand, within GFF4647 at 56.602 kb on + strand, within GFF4647 at 56.603 kb on - strand, within GFF4647 at 56.668 kb on + strand, within GFF4647 at 56.669 kb on - strand, within GFF4647 at 56.674 kb on + strand, within GFF4647 at 56.702 kb on - strand, within GFF4647 at 56.753 kb on + strand, within GFF4647 at 56.779 kb on + strand, within GFF4647 at 56.939 kb on - strand, within GFF4647
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 54,878 - GFF4644 0.56 +0.2 54,936 - GFF4644 0.70 +0.7 55,952 + GFF4646 0.38 -0.9 55,952 + GFF4646 0.38 +0.1 56,015 + GFF4646 0.68 -0.5 56,016 - GFF4646 0.69 -1.0 56,016 - GFF4646 0.69 -0.5 56,182 + -1.0 56,183 - -0.4 56,217 + -0.2 56,217 + +1.0 56,217 + +0.5 56,217 + +0.7 56,217 + +0.2 56,218 - -0.5 56,218 - +0.4 56,249 + GFF4647 0.11 -1.4 56,249 + GFF4647 0.11 -0.5 56,249 + GFF4647 0.11 +1.0 56,250 - GFF4647 0.11 +0.0 56,275 + GFF4647 0.14 +0.7 56,275 + GFF4647 0.14 -0.4 56,276 - GFF4647 0.14 +0.2 56,276 - GFF4647 0.14 -0.8 56,342 - GFF4647 0.21 -0.3 56,441 + GFF4647 0.33 -0.5 56,442 - GFF4647 0.33 +1.1 56,442 - GFF4647 0.33 +1.5 56,505 + GFF4647 0.40 +0.7 56,548 + GFF4647 0.45 +1.0 56,549 - GFF4647 0.45 +0.4 56,602 + GFF4647 0.51 +0.3 56,603 - GFF4647 0.51 -0.5 56,668 + GFF4647 0.58 +0.9 56,669 - GFF4647 0.58 -0.8 56,674 + GFF4647 0.59 -0.2 56,702 - GFF4647 0.62 +0.1 56,753 + GFF4647 0.68 +0.4 56,779 + GFF4647 0.71 +0.9 56,939 - GFF4647 0.89 +0.0
Or see this region's nucleotide sequence