Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4593 and GFF4594 are separated by 8 nucleotides GFF4594 and GFF4595 overlap by 4 nucleotides GFF4595 and GFF4596 overlap by 4 nucleotides
GFF4593 - Cyanuric acid amidohydrolase, at 1,976 to 3,070
GFF4593
GFF4594 - Riboflavin transport system permease protein RibX, at 3,079 to 3,852
GFF4594
GFF4595 - Aliphatic sulfonates import ATP-binding protein SsuB, at 3,849 to 4,676
GFF4595
GFF4596 - Allantoinase, at 4,673 to 6,109
GFF4596
Position (kb) 3
4
5 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 2.972 kb on - strand at 2.972 kb on - strand at 3.152 kb on + strand at 3.326 kb on - strand, within GFF4594 at 3.329 kb on + strand, within GFF4594 at 3.562 kb on + strand, within GFF4594 at 3.563 kb on - strand, within GFF4594 at 3.563 kb on - strand, within GFF4594 at 3.563 kb on - strand, within GFF4594 at 3.575 kb on + strand, within GFF4594 at 3.587 kb on + strand, within GFF4594 at 3.587 kb on + strand, within GFF4594 at 3.588 kb on - strand, within GFF4594 at 3.588 kb on - strand, within GFF4594 at 3.588 kb on - strand, within GFF4594 at 3.668 kb on + strand, within GFF4594 at 3.669 kb on - strand, within GFF4594 at 3.669 kb on - strand, within GFF4594 at 3.669 kb on - strand, within GFF4594 at 3.669 kb on - strand, within GFF4594 at 3.669 kb on - strand, within GFF4594 at 3.845 kb on + strand at 3.846 kb on - strand at 3.846 kb on - strand at 3.846 kb on - strand at 3.846 kb on - strand at 3.846 kb on - strand at 3.846 kb on - strand at 3.940 kb on + strand, within GFF4595 at 3.940 kb on + strand, within GFF4595 at 3.940 kb on + strand, within GFF4595 at 3.940 kb on + strand, within GFF4595 at 3.940 kb on + strand, within GFF4595 at 3.940 kb on + strand, within GFF4595 at 3.949 kb on + strand, within GFF4595 at 4.624 kb on + strand at 4.624 kb on + strand at 4.624 kb on + strand at 4.625 kb on - strand at 4.625 kb on - strand at 4.727 kb on - strand at 4.727 kb on - strand at 4.840 kb on + strand, within GFF4596 at 4.841 kb on - strand, within GFF4596 at 4.841 kb on - strand, within GFF4596 at 5.037 kb on + strand, within GFF4596 at 5.037 kb on + strand, within GFF4596 at 5.037 kb on + strand, within GFF4596 at 5.038 kb on - strand, within GFF4596 at 5.038 kb on - strand, within GFF4596 at 5.038 kb on - strand, within GFF4596 at 5.052 kb on + strand, within GFF4596 at 5.052 kb on + strand, within GFF4596 at 5.283 kb on + strand, within GFF4596 at 5.284 kb on - strand, within GFF4596 at 5.307 kb on + strand, within GFF4596 at 5.307 kb on + strand, within GFF4596 at 5.308 kb on - strand, within GFF4596 at 5.659 kb on - strand, within GFF4596 at 5.659 kb on - strand, within GFF4596 at 5.665 kb on - strand, within GFF4596
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 2,972 - -0.4 2,972 - -0.2 3,152 + -0.4 3,326 - GFF4594 0.32 -0.8 3,329 + GFF4594 0.32 +0.3 3,562 + GFF4594 0.62 +0.8 3,563 - GFF4594 0.63 +0.8 3,563 - GFF4594 0.63 +1.3 3,563 - GFF4594 0.63 +0.4 3,575 + GFF4594 0.64 +0.5 3,587 + GFF4594 0.66 +3.2 3,587 + GFF4594 0.66 -0.2 3,588 - GFF4594 0.66 -1.0 3,588 - GFF4594 0.66 -2.3 3,588 - GFF4594 0.66 -0.6 3,668 + GFF4594 0.76 -0.5 3,669 - GFF4594 0.76 -0.7 3,669 - GFF4594 0.76 -0.9 3,669 - GFF4594 0.76 -0.0 3,669 - GFF4594 0.76 +0.9 3,669 - GFF4594 0.76 +0.3 3,845 + +0.6 3,846 - -1.3 3,846 - +0.3 3,846 - +0.5 3,846 - -0.6 3,846 - +0.3 3,846 - +0.4 3,940 + GFF4595 0.11 -0.2 3,940 + GFF4595 0.11 +1.0 3,940 + GFF4595 0.11 +0.0 3,940 + GFF4595 0.11 -0.7 3,940 + GFF4595 0.11 -0.5 3,940 + GFF4595 0.11 -0.2 3,949 + GFF4595 0.12 +0.3 4,624 + -1.9 4,624 + -0.8 4,624 + -0.8 4,625 - +0.2 4,625 - -0.5 4,727 - -1.9 4,727 - +0.5 4,840 + GFF4596 0.12 +0.2 4,841 - GFF4596 0.12 +0.0 4,841 - GFF4596 0.12 +0.1 5,037 + GFF4596 0.25 -0.9 5,037 + GFF4596 0.25 -1.2 5,037 + GFF4596 0.25 -0.8 5,038 - GFF4596 0.25 +0.5 5,038 - GFF4596 0.25 +0.0 5,038 - GFF4596 0.25 -1.0 5,052 + GFF4596 0.26 -0.3 5,052 + GFF4596 0.26 +1.0 5,283 + GFF4596 0.42 -0.3 5,284 - GFF4596 0.43 -0.3 5,307 + GFF4596 0.44 +0.0 5,307 + GFF4596 0.44 -0.8 5,308 - GFF4596 0.44 -0.3 5,659 - GFF4596 0.69 +0.3 5,659 - GFF4596 0.69 -0.8 5,665 - GFF4596 0.69 -0.7
Or see this region's nucleotide sequence