Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF452 and GFF453 are separated by 252 nucleotides GFF453 and GFF454 overlap by 11 nucleotides GFF454 and GFF455 are separated by 226 nucleotides
GFF452 - hypothetical protein, at 476,056 to 481,188
GFF452
GFF453 - Transcriptional regulatory protein tctD, at 481,441 to 482,109
GFF453
GFF454 - Sensor protein QseC, at 482,099 to 483,481
GFF454
GFF455 - Riboflavin transport system permease protein RibX, at 483,708 to 484,592
GFF455
Position (kb) 482
483
484 Strain fitness (log2 ratio) -2
-1
0
1
2 at 481.100 kb on + strand at 481.101 kb on - strand at 481.101 kb on - strand at 481.101 kb on - strand at 481.101 kb on - strand at 481.275 kb on - strand at 481.335 kb on - strand at 481.574 kb on - strand, within GFF453 at 481.732 kb on + strand, within GFF453 at 482.017 kb on + strand, within GFF453 at 482.017 kb on + strand, within GFF453 at 482.017 kb on + strand, within GFF453 at 482.017 kb on + strand, within GFF453 at 482.087 kb on - strand at 482.352 kb on - strand, within GFF454 at 482.457 kb on - strand, within GFF454 at 482.457 kb on - strand, within GFF454 at 482.457 kb on - strand, within GFF454 at 482.457 kb on - strand, within GFF454 at 482.493 kb on - strand, within GFF454 at 482.613 kb on + strand, within GFF454 at 482.613 kb on + strand, within GFF454 at 482.613 kb on + strand, within GFF454 at 482.780 kb on + strand, within GFF454 at 482.780 kb on + strand, within GFF454 at 482.780 kb on + strand, within GFF454 at 482.780 kb on + strand, within GFF454 at 482.780 kb on + strand, within GFF454 at 482.780 kb on + strand, within GFF454 at 482.780 kb on + strand, within GFF454 at 482.780 kb on + strand, within GFF454 at 482.780 kb on + strand, within GFF454 at 482.780 kb on + strand, within GFF454 at 482.780 kb on + strand, within GFF454 at 482.781 kb on - strand, within GFF454 at 482.781 kb on - strand, within GFF454 at 482.781 kb on - strand, within GFF454 at 482.781 kb on - strand, within GFF454 at 482.781 kb on - strand, within GFF454 at 482.783 kb on - strand, within GFF454 at 483.335 kb on + strand, within GFF454 at 483.336 kb on - strand, within GFF454 at 483.564 kb on - strand at 483.564 kb on - strand at 483.564 kb on - strand at 483.564 kb on - strand at 483.823 kb on - strand, within GFF455 at 484.195 kb on + strand, within GFF455 at 484.195 kb on + strand, within GFF455 at 484.196 kb on - strand, within GFF455 at 484.196 kb on - strand, within GFF455
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 481,100 + +1.0 481,101 - +0.3 481,101 - +0.0 481,101 - -0.7 481,101 - +1.8 481,275 - -0.3 481,335 - -0.6 481,574 - GFF453 0.20 +1.1 481,732 + GFF453 0.43 -0.4 482,017 + GFF453 0.86 -0.2 482,017 + GFF453 0.86 -0.6 482,017 + GFF453 0.86 -0.1 482,017 + GFF453 0.86 -0.2 482,087 - +0.1 482,352 - GFF454 0.18 -0.7 482,457 - GFF454 0.26 -0.2 482,457 - GFF454 0.26 +1.5 482,457 - GFF454 0.26 -0.2 482,457 - GFF454 0.26 -0.0 482,493 - GFF454 0.28 +0.0 482,613 + GFF454 0.37 -0.8 482,613 + GFF454 0.37 -0.5 482,613 + GFF454 0.37 +0.3 482,780 + GFF454 0.49 -0.5 482,780 + GFF454 0.49 -0.7 482,780 + GFF454 0.49 +0.0 482,780 + GFF454 0.49 +0.6 482,780 + GFF454 0.49 -0.0 482,780 + GFF454 0.49 -1.2 482,780 + GFF454 0.49 +2.0 482,780 + GFF454 0.49 +0.5 482,780 + GFF454 0.49 +1.3 482,780 + GFF454 0.49 -1.1 482,780 + GFF454 0.49 +0.2 482,781 - GFF454 0.49 -1.2 482,781 - GFF454 0.49 -2.2 482,781 - GFF454 0.49 +0.6 482,781 - GFF454 0.49 +0.3 482,781 - GFF454 0.49 +0.4 482,783 - GFF454 0.49 -0.6 483,335 + GFF454 0.89 -0.4 483,336 - GFF454 0.89 -0.5 483,564 - +0.1 483,564 - -0.1 483,564 - -0.6 483,564 - +0.2 483,823 - GFF455 0.13 +0.2 484,195 + GFF455 0.55 -1.0 484,195 + GFF455 0.55 -0.4 484,196 - GFF455 0.55 +0.0 484,196 - GFF455 0.55 +0.6
Or see this region's nucleotide sequence