Strain Fitness in Xanthobacter sp. DMC5 around GFF4484

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4483 and GFF4484 are separated by 192 nucleotidesGFF4484 and GFF4485 overlap by 4 nucleotidesGFF4485 and GFF4486 are separated by 4 nucleotides GFF4483 - hypothetical protein, at 63,608 to 64,651 GFF4483 GFF4484 - Flagellar biosynthetic protein FliP, at 64,844 to 65,671 GFF4484 GFF4485 - hypothetical protein, at 65,668 to 66,177 GFF4485 GFF4486 - Flagellar L-ring protein, at 66,182 to 66,919 GFF4486 Position (kb) 64 65 66Strain fitness (log2 ratio) -1 0 1at 63.873 kb on + strand, within GFF4483at 63.873 kb on + strand, within GFF4483at 63.975 kb on + strand, within GFF4483at 63.975 kb on + strand, within GFF4483at 63.975 kb on + strand, within GFF4483at 63.975 kb on + strand, within GFF4483at 63.976 kb on - strand, within GFF4483at 63.976 kb on - strand, within GFF4483at 63.976 kb on - strand, within GFF4483at 64.016 kb on - strand, within GFF4483at 64.128 kb on + strand, within GFF4483at 64.128 kb on + strand, within GFF4483at 64.129 kb on - strand, within GFF4483at 64.186 kb on + strand, within GFF4483at 64.308 kb on + strand, within GFF4483at 64.308 kb on + strand, within GFF4483at 64.308 kb on + strand, within GFF4483at 64.516 kb on - strand, within GFF4483at 64.516 kb on - strand, within GFF4483at 64.516 kb on - strand, within GFF4483at 64.802 kb on + strandat 64.803 kb on - strandat 64.835 kb on - strandat 65.084 kb on + strand, within GFF4484at 65.084 kb on + strand, within GFF4484at 65.084 kb on + strand, within GFF4484at 65.085 kb on - strand, within GFF4484at 65.085 kb on - strand, within GFF4484at 65.322 kb on + strand, within GFF4484at 65.323 kb on - strand, within GFF4484at 65.323 kb on - strand, within GFF4484at 65.323 kb on - strand, within GFF4484at 65.403 kb on + strand, within GFF4484at 65.570 kb on + strand, within GFF4484at 65.570 kb on + strand, within GFF4484at 65.807 kb on + strand, within GFF4485at 65.807 kb on + strand, within GFF4485at 65.808 kb on - strand, within GFF4485at 65.808 kb on - strand, within GFF4485at 66.204 kb on + strandat 66.204 kb on + strandat 66.204 kb on + strandat 66.204 kb on + strandat 66.205 kb on - strandat 66.205 kb on - strandat 66.205 kb on - strandat 66.205 kb on - strandat 66.291 kb on + strand, within GFF4486at 66.315 kb on - strand, within GFF4486at 66.315 kb on - strand, within GFF4486at 66.363 kb on + strand, within GFF4486at 66.363 kb on + strand, within GFF4486at 66.364 kb on - strand, within GFF4486at 66.493 kb on + strand, within GFF4486at 66.494 kb on - strand, within GFF4486at 66.494 kb on - strand, within GFF4486

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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63,873 + GFF4483 0.25 +0.6
63,873 + GFF4483 0.25 +0.1
63,975 + GFF4483 0.35 -0.5
63,975 + GFF4483 0.35 -1.0
63,975 + GFF4483 0.35 -0.1
63,975 + GFF4483 0.35 -0.0
63,976 - GFF4483 0.35 -0.0
63,976 - GFF4483 0.35 +1.2
63,976 - GFF4483 0.35 +1.0
64,016 - GFF4483 0.39 -0.1
64,128 + GFF4483 0.50 -0.0
64,128 + GFF4483 0.50 -0.8
64,129 - GFF4483 0.50 -0.1
64,186 + GFF4483 0.55 -0.6
64,308 + GFF4483 0.67 -0.4
64,308 + GFF4483 0.67 +0.4
64,308 + GFF4483 0.67 -0.9
64,516 - GFF4483 0.87 +0.4
64,516 - GFF4483 0.87 +0.5
64,516 - GFF4483 0.87 -0.0
64,802 + -0.4
64,803 - +0.2
64,835 - +0.0
65,084 + GFF4484 0.29 +0.0
65,084 + GFF4484 0.29 -1.1
65,084 + GFF4484 0.29 +0.9
65,085 - GFF4484 0.29 +0.7
65,085 - GFF4484 0.29 -0.9
65,322 + GFF4484 0.58 +0.0
65,323 - GFF4484 0.58 +0.4
65,323 - GFF4484 0.58 -0.4
65,323 - GFF4484 0.58 -0.4
65,403 + GFF4484 0.68 -0.8
65,570 + GFF4484 0.88 +0.4
65,570 + GFF4484 0.88 +0.7
65,807 + GFF4485 0.27 -0.5
65,807 + GFF4485 0.27 -0.7
65,808 - GFF4485 0.27 -0.6
65,808 - GFF4485 0.27 -0.6
66,204 + -0.9
66,204 + -0.9
66,204 + +0.8
66,204 + +0.5
66,205 - -0.5
66,205 - -0.7
66,205 - -0.5
66,205 - -0.1
66,291 + GFF4486 0.15 +1.0
66,315 - GFF4486 0.18 +0.5
66,315 - GFF4486 0.18 +0.5
66,363 + GFF4486 0.25 +0.4
66,363 + GFF4486 0.25 -1.6
66,364 - GFF4486 0.25 -1.6
66,493 + GFF4486 0.42 -1.5
66,494 - GFF4486 0.42 -0.7
66,494 - GFF4486 0.42 -0.4

Or see this region's nucleotide sequence