Strain Fitness in Xanthobacter sp. DMC5 around GFF4444

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4443 and GFF4444 overlap by 4 nucleotidesGFF4444 and GFF4445 are separated by 221 nucleotides GFF4443 - Uptake hydrogenase large subunit, at 18,979 to 20,793 GFF4443 GFF4444 - Uptake hydrogenase small subunit, at 20,790 to 21,896 GFF4444 GFF4445 - hypothetical protein, at 22,118 to 22,825 GFF4445 Position (kb) 20 21 22Strain fitness (log2 ratio) -2 -1 0 1 2at 19.855 kb on - strand, within GFF4443at 19.878 kb on - strand, within GFF4443at 19.878 kb on - strand, within GFF4443at 19.886 kb on + strand, within GFF4443at 19.886 kb on + strand, within GFF4443at 19.886 kb on + strand, within GFF4443at 19.887 kb on - strand, within GFF4443at 19.923 kb on - strand, within GFF4443at 19.970 kb on + strand, within GFF4443at 19.970 kb on + strand, within GFF4443at 19.970 kb on + strand, within GFF4443at 19.970 kb on + strand, within GFF4443at 19.971 kb on - strand, within GFF4443at 20.102 kb on + strand, within GFF4443at 20.103 kb on - strand, within GFF4443at 20.103 kb on - strand, within GFF4443at 20.121 kb on + strand, within GFF4443at 20.181 kb on - strand, within GFF4443at 20.222 kb on + strand, within GFF4443at 20.222 kb on + strand, within GFF4443at 20.223 kb on - strand, within GFF4443at 20.240 kb on + strand, within GFF4443at 20.241 kb on - strand, within GFF4443at 20.241 kb on - strand, within GFF4443at 20.241 kb on - strand, within GFF4443at 20.427 kb on - strand, within GFF4443at 20.427 kb on - strand, within GFF4443at 20.427 kb on - strand, within GFF4443at 20.673 kb on + strandat 20.673 kb on + strandat 20.673 kb on + strandat 20.674 kb on - strandat 20.674 kb on - strandat 20.674 kb on - strandat 20.674 kb on - strandat 20.674 kb on - strandat 20.674 kb on - strandat 20.674 kb on - strandat 20.674 kb on - strandat 20.974 kb on + strand, within GFF4444at 21.086 kb on - strand, within GFF4444at 21.116 kb on - strand, within GFF4444at 21.116 kb on - strand, within GFF4444at 21.116 kb on - strand, within GFF4444at 21.116 kb on - strand, within GFF4444at 21.124 kb on + strand, within GFF4444at 21.163 kb on + strand, within GFF4444at 21.163 kb on + strand, within GFF4444at 21.164 kb on - strand, within GFF4444at 21.164 kb on - strand, within GFF4444at 21.220 kb on + strand, within GFF4444at 21.220 kb on + strand, within GFF4444at 21.221 kb on - strand, within GFF4444at 21.280 kb on + strand, within GFF4444at 21.280 kb on + strand, within GFF4444at 21.280 kb on + strand, within GFF4444at 21.280 kb on + strand, within GFF4444at 21.281 kb on - strand, within GFF4444at 21.281 kb on - strand, within GFF4444at 21.281 kb on - strand, within GFF4444at 21.350 kb on - strand, within GFF4444at 21.412 kb on + strand, within GFF4444at 21.412 kb on + strand, within GFF4444at 21.412 kb on + strand, within GFF4444at 21.413 kb on - strand, within GFF4444at 21.413 kb on - strand, within GFF4444at 21.413 kb on - strand, within GFF4444at 21.413 kb on - strand, within GFF4444at 21.459 kb on + strand, within GFF4444at 21.459 kb on + strand, within GFF4444at 21.463 kb on + strand, within GFF4444at 21.505 kb on + strand, within GFF4444at 21.505 kb on + strand, within GFF4444at 21.506 kb on - strand, within GFF4444at 21.553 kb on + strand, within GFF4444at 21.553 kb on + strand, within GFF4444at 21.553 kb on + strand, within GFF4444at 21.554 kb on - strand, within GFF4444at 21.566 kb on - strand, within GFF4444at 21.829 kb on + strandat 21.829 kb on + strandat 21.877 kb on + strandat 21.878 kb on - strandat 21.878 kb on - strandat 21.896 kb on + strandat 21.897 kb on - strandat 21.992 kb on - strandat 22.148 kb on + strandat 22.159 kb on + strandat 22.182 kb on + strandat 22.182 kb on + strandat 22.182 kb on + strandat 22.183 kb on - strandat 22.183 kb on - strandat 22.183 kb on - strandat 22.251 kb on + strand, within GFF4445at 22.422 kb on - strand, within GFF4445at 22.447 kb on - strand, within GFF4445at 22.462 kb on - strand, within GFF4445at 22.690 kb on - strand, within GFF4445at 22.700 kb on + strand, within GFF4445at 22.714 kb on + strand, within GFF4445at 22.715 kb on - strand, within GFF4445at 22.844 kb on + strandat 22.845 kb on - strandat 22.870 kb on + strandat 22.870 kb on + strandat 22.871 kb on - strandat 22.871 kb on - strandat 22.871 kb on - strandat 22.876 kb on - strandat 22.888 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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19,855 - GFF4443 0.48 +0.6
19,878 - GFF4443 0.50 -0.0
19,878 - GFF4443 0.50 +0.8
19,886 + GFF4443 0.50 -0.9
19,886 + GFF4443 0.50 -0.5
19,886 + GFF4443 0.50 +1.1
19,887 - GFF4443 0.50 -0.9
19,923 - GFF4443 0.52 -1.5
19,970 + GFF4443 0.55 +0.5
19,970 + GFF4443 0.55 +1.1
19,970 + GFF4443 0.55 +0.4
19,970 + GFF4443 0.55 +0.8
19,971 - GFF4443 0.55 -0.0
20,102 + GFF4443 0.62 +0.6
20,103 - GFF4443 0.62 +0.8
20,103 - GFF4443 0.62 -0.1
20,121 + GFF4443 0.63 -0.0
20,181 - GFF4443 0.66 +1.5
20,222 + GFF4443 0.68 +0.8
20,222 + GFF4443 0.68 +0.3
20,223 - GFF4443 0.69 +0.6
20,240 + GFF4443 0.69 -1.0
20,241 - GFF4443 0.70 +0.3
20,241 - GFF4443 0.70 -0.1
20,241 - GFF4443 0.70 +0.1
20,427 - GFF4443 0.80 -0.1
20,427 - GFF4443 0.80 -0.0
20,427 - GFF4443 0.80 +0.5
20,673 + +0.3
20,673 + +0.1
20,673 + +0.1
20,674 - -0.3
20,674 - +0.6
20,674 - -1.6
20,674 - +1.1
20,674 - +0.4
20,674 - -0.2
20,674 - -0.2
20,674 - +1.2
20,974 + GFF4444 0.17 +0.2
21,086 - GFF4444 0.27 +1.1
21,116 - GFF4444 0.29 -0.7
21,116 - GFF4444 0.29 +0.4
21,116 - GFF4444 0.29 +0.1
21,116 - GFF4444 0.29 -0.0
21,124 + GFF4444 0.30 +2.2
21,163 + GFF4444 0.34 +0.6
21,163 + GFF4444 0.34 -0.2
21,164 - GFF4444 0.34 -0.1
21,164 - GFF4444 0.34 +0.8
21,220 + GFF4444 0.39 -0.1
21,220 + GFF4444 0.39 -0.4
21,221 - GFF4444 0.39 +0.8
21,280 + GFF4444 0.44 +0.2
21,280 + GFF4444 0.44 -0.9
21,280 + GFF4444 0.44 +0.2
21,280 + GFF4444 0.44 -2.1
21,281 - GFF4444 0.44 +0.7
21,281 - GFF4444 0.44 +1.1
21,281 - GFF4444 0.44 +0.6
21,350 - GFF4444 0.51 -0.5
21,412 + GFF4444 0.56 -0.6
21,412 + GFF4444 0.56 -0.1
21,412 + GFF4444 0.56 +0.4
21,413 - GFF4444 0.56 +0.4
21,413 - GFF4444 0.56 +1.3
21,413 - GFF4444 0.56 +0.8
21,413 - GFF4444 0.56 +1.2
21,459 + GFF4444 0.60 -0.3
21,459 + GFF4444 0.60 -0.0
21,463 + GFF4444 0.61 -0.5
21,505 + GFF4444 0.65 +0.8
21,505 + GFF4444 0.65 -0.6
21,506 - GFF4444 0.65 -0.8
21,553 + GFF4444 0.69 +0.2
21,553 + GFF4444 0.69 +0.5
21,553 + GFF4444 0.69 -0.4
21,554 - GFF4444 0.69 +1.3
21,566 - GFF4444 0.70 -0.6
21,829 + -0.2
21,829 + -0.7
21,877 + +0.3
21,878 - +0.5
21,878 - +1.2
21,896 + -1.0
21,897 - -0.6
21,992 - +0.5
22,148 + +0.4
22,159 + +1.3
22,182 + -1.2
22,182 + -0.1
22,182 + +0.4
22,183 - -0.4
22,183 - -1.0
22,183 - -0.3
22,251 + GFF4445 0.19 +0.3
22,422 - GFF4445 0.43 -1.8
22,447 - GFF4445 0.46 -0.0
22,462 - GFF4445 0.49 -0.2
22,690 - GFF4445 0.81 +0.1
22,700 + GFF4445 0.82 +0.5
22,714 + GFF4445 0.84 +1.2
22,715 - GFF4445 0.84 -0.1
22,844 + +0.2
22,845 - +0.3
22,870 + +0.8
22,870 + +0.8
22,871 - -0.8
22,871 - -0.5
22,871 - +0.4
22,876 - -0.1
22,888 - -0.9

Or see this region's nucleotide sequence