Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4349 and GFF4350 are separated by 9 nucleotides GFF4350 and GFF4351 are separated by 153 nucleotides GFF4351 and GFF4352 overlap by 4 nucleotides
GFF4349 - GTP 3',8-cyclase, at 130,992 to 132,107
GFF4349
GFF4350 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 132,117 to 132,821
GFF4350
GFF4351 - Multidrug resistance protein MdtE, at 132,975 to 134,108
GFF4351
GFF4352 - Multidrug resistance protein MdtC, at 134,105 to 137,194
GFF4352
Position (kb) 132
133
134
135 Strain fitness (log2 ratio) -1
0
1
2 at 132.328 kb on + strand, within GFF4350 at 132.329 kb on - strand, within GFF4350 at 132.329 kb on - strand, within GFF4350 at 132.352 kb on + strand, within GFF4350 at 132.505 kb on + strand, within GFF4350 at 132.506 kb on - strand, within GFF4350 at 132.886 kb on + strand at 132.887 kb on - strand at 132.887 kb on - strand at 132.887 kb on - strand at 132.887 kb on - strand at 132.888 kb on + strand at 132.889 kb on - strand at 132.919 kb on + strand at 132.920 kb on - strand at 132.938 kb on - strand at 132.949 kb on - strand at 133.201 kb on - strand, within GFF4351 at 133.201 kb on - strand, within GFF4351 at 133.374 kb on + strand, within GFF4351 at 133.374 kb on + strand, within GFF4351 at 133.426 kb on - strand, within GFF4351 at 133.426 kb on - strand, within GFF4351 at 133.772 kb on + strand, within GFF4351 at 133.772 kb on + strand, within GFF4351 at 133.772 kb on + strand, within GFF4351 at 133.772 kb on + strand, within GFF4351 at 133.773 kb on - strand, within GFF4351 at 134.162 kb on + strand at 134.162 kb on + strand at 134.163 kb on - strand at 134.163 kb on - strand at 134.163 kb on - strand at 134.163 kb on - strand at 134.163 kb on - strand at 134.363 kb on + strand at 134.363 kb on + strand at 134.364 kb on - strand at 134.441 kb on + strand, within GFF4352 at 134.442 kb on - strand, within GFF4352 at 134.543 kb on + strand, within GFF4352 at 134.588 kb on + strand, within GFF4352 at 134.588 kb on + strand, within GFF4352 at 134.588 kb on + strand, within GFF4352 at 134.589 kb on - strand, within GFF4352 at 134.589 kb on - strand, within GFF4352 at 134.589 kb on - strand, within GFF4352
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 132,328 + GFF4350 0.30 +0.8 132,329 - GFF4350 0.30 -1.1 132,329 - GFF4350 0.30 -0.1 132,352 + GFF4350 0.33 -0.6 132,505 + GFF4350 0.55 +0.8 132,506 - GFF4350 0.55 +0.3 132,886 + -0.0 132,887 - -0.2 132,887 - +0.3 132,887 - +0.2 132,887 - -0.6 132,888 + -0.1 132,889 - -0.6 132,919 + -0.2 132,920 - -0.1 132,938 - -1.0 132,949 - +0.2 133,201 - GFF4351 0.20 -0.4 133,201 - GFF4351 0.20 -0.2 133,374 + GFF4351 0.35 -0.8 133,374 + GFF4351 0.35 +0.9 133,426 - GFF4351 0.40 +0.8 133,426 - GFF4351 0.40 +0.1 133,772 + GFF4351 0.70 +0.3 133,772 + GFF4351 0.70 +0.5 133,772 + GFF4351 0.70 -0.2 133,772 + GFF4351 0.70 -0.3 133,773 - GFF4351 0.70 +0.0 134,162 + +0.2 134,162 + -0.2 134,163 - +0.6 134,163 - +1.9 134,163 - +0.6 134,163 - +0.7 134,163 - +0.4 134,363 + -0.1 134,363 + -0.2 134,364 - -0.5 134,441 + GFF4352 0.11 -0.2 134,442 - GFF4352 0.11 -0.5 134,543 + GFF4352 0.14 +1.1 134,588 + GFF4352 0.16 -0.0 134,588 + GFF4352 0.16 +0.2 134,588 + GFF4352 0.16 -0.1 134,589 - GFF4352 0.16 -0.1 134,589 - GFF4352 0.16 +0.2 134,589 - GFF4352 0.16 +0.0
Or see this region's nucleotide sequence