Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4335 and GFF4336 are separated by 99 nucleotides GFF4336 and GFF4337 overlap by 1 nucleotides GFF4337 and GFF4338 are separated by 29 nucleotides GFF4338 and GFF4339 are separated by 20 nucleotides
GFF4335 - L-arabonate dehydratase, at 117,999 to 119,849
GFF4335
GFF4336 - putative protein, at 119,949 to 120,779
GFF4336
GFF4337 - hypothetical protein, at 120,779 to 121,480
GFF4337
GFF4338 - 2-keto-3-deoxy-L-fuconate dehydrogenase, at 121,510 to 122,256
GFF4338
GFF4339 - D-erythronate dehydrogenase, at 122,277 to 123,254
GFF4339
Position (kb) 120
121
122 Strain fitness (log2 ratio) -1
0
1 at 119.900 kb on + strand at 119.901 kb on - strand at 119.901 kb on - strand at 119.901 kb on - strand at 120.046 kb on - strand, within GFF4336 at 120.093 kb on + strand, within GFF4336 at 120.093 kb on + strand, within GFF4336 at 120.093 kb on + strand, within GFF4336 at 120.210 kb on + strand, within GFF4336 at 120.211 kb on - strand, within GFF4336 at 120.318 kb on + strand, within GFF4336 at 120.319 kb on - strand, within GFF4336 at 120.493 kb on - strand, within GFF4336 at 120.956 kb on + strand, within GFF4337 at 120.956 kb on + strand, within GFF4337 at 120.956 kb on + strand, within GFF4337 at 121.004 kb on + strand, within GFF4337 at 121.088 kb on + strand, within GFF4337 at 121.088 kb on + strand, within GFF4337 at 121.088 kb on + strand, within GFF4337 at 121.088 kb on + strand, within GFF4337 at 121.088 kb on + strand, within GFF4337 at 121.089 kb on - strand, within GFF4337 at 121.139 kb on + strand, within GFF4337 at 121.139 kb on + strand, within GFF4337 at 121.140 kb on - strand, within GFF4337 at 121.184 kb on + strand, within GFF4337 at 121.184 kb on + strand, within GFF4337 at 121.184 kb on + strand, within GFF4337 at 121.184 kb on + strand, within GFF4337 at 121.185 kb on - strand, within GFF4337 at 121.185 kb on - strand, within GFF4337 at 121.230 kb on - strand, within GFF4337 at 121.479 kb on - strand at 121.479 kb on - strand at 121.943 kb on - strand, within GFF4338 at 122.185 kb on + strand at 122.186 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 119,900 + +0.3 119,901 - -1.1 119,901 - -0.4 119,901 - -0.3 120,046 - GFF4336 0.12 -0.5 120,093 + GFF4336 0.17 +0.0 120,093 + GFF4336 0.17 -0.9 120,093 + GFF4336 0.17 -1.1 120,210 + GFF4336 0.31 +0.1 120,211 - GFF4336 0.32 -0.5 120,318 + GFF4336 0.44 -0.3 120,319 - GFF4336 0.45 +0.2 120,493 - GFF4336 0.65 -0.5 120,956 + GFF4337 0.25 -0.4 120,956 + GFF4337 0.25 -0.1 120,956 + GFF4337 0.25 +0.7 121,004 + GFF4337 0.32 -0.1 121,088 + GFF4337 0.44 +1.1 121,088 + GFF4337 0.44 -1.7 121,088 + GFF4337 0.44 -0.2 121,088 + GFF4337 0.44 +1.0 121,088 + GFF4337 0.44 -0.3 121,089 - GFF4337 0.44 +0.5 121,139 + GFF4337 0.51 +0.4 121,139 + GFF4337 0.51 -0.1 121,140 - GFF4337 0.51 +0.5 121,184 + GFF4337 0.58 +0.4 121,184 + GFF4337 0.58 -1.5 121,184 + GFF4337 0.58 +1.0 121,184 + GFF4337 0.58 -0.0 121,185 - GFF4337 0.58 -0.5 121,185 - GFF4337 0.58 -1.2 121,230 - GFF4337 0.64 -0.0 121,479 - -0.1 121,479 - -1.6 121,943 - GFF4338 0.58 -0.2 122,185 + +0.7 122,186 - +0.1
Or see this region's nucleotide sequence