Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4296 and GFF4297 are separated by 293 nucleotides GFF4297 and GFF4298 overlap by 17 nucleotides GFF4298 and GFF4299 are separated by 154 nucleotides
GFF4296 - Riboflavin transport system permease protein RibX, at 76,849 to 77,658
GFF4296
GFF4297 - Linear gramicidin dehydrogenase LgrE, at 77,952 to 78,653
GFF4297
GFF4298 - hypothetical protein, at 78,637 to 79,353
GFF4298
GFF4299 - HTH-type transcriptional repressor RspR, at 79,508 to 80,197
GFF4299
Position (kb) 77
78
79 Strain fitness (log2 ratio) -2
-1
0
1
2 at 77.038 kb on + strand, within GFF4296 at 77.038 kb on + strand, within GFF4296 at 77.357 kb on + strand, within GFF4296 at 77.357 kb on + strand, within GFF4296 at 77.357 kb on + strand, within GFF4296 at 77.358 kb on - strand, within GFF4296 at 77.358 kb on - strand, within GFF4296 at 77.528 kb on + strand, within GFF4296 at 77.529 kb on - strand, within GFF4296 at 77.529 kb on - strand, within GFF4296 at 77.867 kb on + strand at 77.867 kb on + strand at 77.868 kb on - strand at 77.998 kb on - strand at 78.426 kb on + strand, within GFF4297 at 78.426 kb on + strand, within GFF4297 at 78.426 kb on + strand, within GFF4297 at 78.426 kb on + strand, within GFF4297 at 78.426 kb on + strand, within GFF4297 at 78.426 kb on + strand, within GFF4297 at 78.426 kb on + strand, within GFF4297 at 78.427 kb on - strand, within GFF4297 at 78.427 kb on - strand, within GFF4297 at 78.427 kb on - strand, within GFF4297 at 78.427 kb on - strand, within GFF4297 at 78.427 kb on - strand, within GFF4297 at 79.282 kb on + strand at 79.352 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 77,038 + GFF4296 0.23 +1.6 77,038 + GFF4296 0.23 +0.2 77,357 + GFF4296 0.63 +0.4 77,357 + GFF4296 0.63 -2.0 77,357 + GFF4296 0.63 -1.0 77,358 - GFF4296 0.63 -1.9 77,358 - GFF4296 0.63 +0.0 77,528 + GFF4296 0.84 +1.1 77,529 - GFF4296 0.84 +1.6 77,529 - GFF4296 0.84 +0.2 77,867 + -0.7 77,867 + +0.1 77,868 - +1.9 77,998 - -0.3 78,426 + GFF4297 0.68 +0.7 78,426 + GFF4297 0.68 +0.4 78,426 + GFF4297 0.68 +0.2 78,426 + GFF4297 0.68 +0.8 78,426 + GFF4297 0.68 +0.1 78,426 + GFF4297 0.68 -0.0 78,426 + GFF4297 0.68 -0.3 78,427 - GFF4297 0.68 +1.4 78,427 - GFF4297 0.68 -0.6 78,427 - GFF4297 0.68 -0.8 78,427 - GFF4297 0.68 +0.6 78,427 - GFF4297 0.68 +1.0 79,282 + -0.3 79,352 - +0.9
Or see this region's nucleotide sequence