Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4282 and GFF4283 are separated by 291 nucleotides GFF4283 and GFF4284 are separated by 599 nucleotides
GFF4282 - hypothetical protein, at 54,763 to 55,413
GFF4282
GFF4283 - hypothetical protein, at 55,705 to 63,177
GFF4283
GFF4284 - HTH-type transcriptional activator RhaS, at 63,777 to 64,556
GFF4284
Position (kb) 55
56
57
58
59
60
61
62
63
64 Strain fitness (log2 ratio) -1
0
1
2 at 54.944 kb on + strand, within GFF4282 at 55.469 kb on + strand at 55.469 kb on + strand at 55.470 kb on - strand at 55.660 kb on + strand at 55.748 kb on + strand at 55.748 kb on + strand at 55.749 kb on - strand at 55.919 kb on + strand at 55.919 kb on + strand at 55.920 kb on - strand at 55.955 kb on + strand at 55.955 kb on + strand at 55.971 kb on - strand at 56.081 kb on + strand at 56.081 kb on + strand at 56.082 kb on - strand at 56.192 kb on + strand at 56.223 kb on - strand at 56.223 kb on - strand at 56.223 kb on - strand at 56.223 kb on - strand at 56.223 kb on - strand at 56.223 kb on - strand at 56.265 kb on - strand at 56.265 kb on - strand at 56.282 kb on + strand at 56.282 kb on + strand at 56.282 kb on + strand at 56.282 kb on + strand at 56.282 kb on + strand at 56.283 kb on - strand at 56.283 kb on - strand at 56.283 kb on - strand at 56.283 kb on - strand at 56.283 kb on - strand at 56.283 kb on - strand at 56.283 kb on - strand at 56.283 kb on - strand at 56.291 kb on + strand at 56.291 kb on + strand at 56.292 kb on - strand at 56.292 kb on - strand at 56.292 kb on - strand at 56.343 kb on - strand at 56.363 kb on + strand at 56.364 kb on - strand at 56.447 kb on + strand at 56.448 kb on - strand at 56.448 kb on - strand at 56.636 kb on + strand, within GFF4283 at 56.637 kb on - strand, within GFF4283 at 56.637 kb on - strand, within GFF4283 at 56.637 kb on - strand, within GFF4283 at 56.637 kb on - strand, within GFF4283 at 56.637 kb on - strand, within GFF4283 at 56.757 kb on - strand, within GFF4283 at 56.786 kb on + strand, within GFF4283 at 56.787 kb on - strand, within GFF4283 at 56.831 kb on + strand, within GFF4283 at 56.832 kb on - strand, within GFF4283 at 56.832 kb on - strand, within GFF4283 at 56.855 kb on + strand, within GFF4283 at 56.855 kb on + strand, within GFF4283 at 56.855 kb on + strand, within GFF4283 at 56.856 kb on - strand, within GFF4283 at 56.856 kb on - strand, within GFF4283 at 56.970 kb on + strand, within GFF4283 at 57.062 kb on + strand, within GFF4283 at 57.062 kb on + strand, within GFF4283 at 57.063 kb on - strand, within GFF4283 at 57.063 kb on - strand, within GFF4283 at 57.132 kb on + strand, within GFF4283 at 57.317 kb on + strand, within GFF4283 at 57.317 kb on + strand, within GFF4283 at 57.318 kb on - strand, within GFF4283 at 57.500 kb on + strand, within GFF4283 at 57.501 kb on - strand, within GFF4283 at 57.501 kb on - strand, within GFF4283 at 57.501 kb on - strand, within GFF4283 at 57.840 kb on + strand, within GFF4283 at 57.841 kb on - strand, within GFF4283 at 59.046 kb on + strand, within GFF4283 at 59.047 kb on - strand, within GFF4283 at 59.736 kb on + strand, within GFF4283 at 59.790 kb on - strand, within GFF4283 at 60.684 kb on - strand, within GFF4283 at 60.847 kb on - strand, within GFF4283 at 61.178 kb on + strand, within GFF4283 at 61.178 kb on + strand, within GFF4283 at 61.178 kb on + strand, within GFF4283 at 61.178 kb on + strand, within GFF4283 at 61.390 kb on - strand, within GFF4283 at 61.390 kb on - strand, within GFF4283 at 61.398 kb on + strand, within GFF4283 at 62.422 kb on - strand, within GFF4283 at 62.449 kb on + strand at 62.700 kb on + strand at 62.701 kb on - strand at 62.701 kb on - strand at 62.796 kb on - strand at 62.802 kb on + strand at 62.802 kb on + strand at 63.109 kb on + strand at 63.110 kb on - strand at 63.526 kb on - strand at 63.755 kb on + strand at 63.755 kb on + strand at 63.799 kb on + strand at 63.799 kb on + strand at 63.799 kb on + strand at 63.901 kb on + strand, within GFF4284 at 64.065 kb on + strand, within GFF4284 at 64.065 kb on + strand, within GFF4284 at 64.065 kb on + strand, within GFF4284 at 64.065 kb on + strand, within GFF4284 at 64.066 kb on - strand, within GFF4284 at 64.066 kb on - strand, within GFF4284 at 64.066 kb on - strand, within GFF4284 at 64.066 kb on - strand, within GFF4284
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 54,944 + GFF4282 0.28 -0.4 55,469 + +0.1 55,469 + -0.0 55,470 - +0.9 55,660 + +0.1 55,748 + +0.2 55,748 + +0.3 55,749 - -0.2 55,919 + +0.2 55,919 + -0.4 55,920 - +0.1 55,955 + +0.2 55,955 + -0.3 55,971 - +0.4 56,081 + +0.4 56,081 + -0.5 56,082 - -0.5 56,192 + -0.3 56,223 - +0.4 56,223 - +0.1 56,223 - -1.2 56,223 - -0.2 56,223 - -0.8 56,223 - -0.2 56,265 - +0.5 56,265 - +0.8 56,282 + -0.1 56,282 + -0.4 56,282 + +0.2 56,282 + +0.5 56,282 + -0.6 56,283 - -0.4 56,283 - +0.2 56,283 - +0.2 56,283 - +1.1 56,283 - -1.0 56,283 - -0.3 56,283 - -1.0 56,283 - +0.5 56,291 + +1.0 56,291 + -0.6 56,292 - -0.7 56,292 - -0.8 56,292 - +1.1 56,343 - -1.7 56,363 + +0.2 56,364 - -0.1 56,447 + -0.0 56,448 - +0.3 56,448 - -0.4 56,636 + GFF4283 0.12 +1.9 56,637 - GFF4283 0.12 -0.4 56,637 - GFF4283 0.12 +0.6 56,637 - GFF4283 0.12 -0.0 56,637 - GFF4283 0.12 -1.2 56,637 - GFF4283 0.12 -0.7 56,757 - GFF4283 0.14 -0.5 56,786 + GFF4283 0.14 +0.7 56,787 - GFF4283 0.14 +0.3 56,831 + GFF4283 0.15 -0.7 56,832 - GFF4283 0.15 +0.2 56,832 - GFF4283 0.15 -0.0 56,855 + GFF4283 0.15 -0.7 56,855 + GFF4283 0.15 +0.9 56,855 + GFF4283 0.15 +0.1 56,856 - GFF4283 0.15 +0.1 56,856 - GFF4283 0.15 -0.5 56,970 + GFF4283 0.17 +0.1 57,062 + GFF4283 0.18 -0.0 57,062 + GFF4283 0.18 +0.2 57,063 - GFF4283 0.18 +0.4 57,063 - GFF4283 0.18 +0.2 57,132 + GFF4283 0.19 -1.0 57,317 + GFF4283 0.22 +0.8 57,317 + GFF4283 0.22 -0.3 57,318 - GFF4283 0.22 -1.7 57,500 + GFF4283 0.24 +0.7 57,501 - GFF4283 0.24 +0.7 57,501 - GFF4283 0.24 -0.5 57,501 - GFF4283 0.24 +0.6 57,840 + GFF4283 0.29 +0.5 57,841 - GFF4283 0.29 -0.1 59,046 + GFF4283 0.45 -0.7 59,047 - GFF4283 0.45 +0.3 59,736 + GFF4283 0.54 +0.2 59,790 - GFF4283 0.55 -0.3 60,684 - GFF4283 0.67 +1.5 60,847 - GFF4283 0.69 +0.4 61,178 + GFF4283 0.73 -1.5 61,178 + GFF4283 0.73 -0.0 61,178 + GFF4283 0.73 -0.9 61,178 + GFF4283 0.73 -0.3 61,390 - GFF4283 0.76 +1.1 61,390 - GFF4283 0.76 +1.0 61,398 + GFF4283 0.76 -0.5 62,422 - GFF4283 0.90 -0.7 62,449 + -0.9 62,700 + +0.6 62,701 - -1.1 62,701 - +1.1 62,796 - -0.2 62,802 + -0.0 62,802 + +0.2 63,109 + -1.2 63,110 - +0.1 63,526 - +0.3 63,755 + -0.3 63,755 + +1.2 63,799 + +0.8 63,799 + -0.5 63,799 + -0.7 63,901 + GFF4284 0.16 -0.7 64,065 + GFF4284 0.37 +0.8 64,065 + GFF4284 0.37 -0.6 64,065 + GFF4284 0.37 -0.1 64,065 + GFF4284 0.37 +0.1 64,066 - GFF4284 0.37 -0.3 64,066 - GFF4284 0.37 -0.1 64,066 - GFF4284 0.37 +0.1 64,066 - GFF4284 0.37 +0.5
Or see this region's nucleotide sequence