Strain Fitness in Xanthobacter sp. DMC5 around GFF4191

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4190 and GFF4191 are separated by 188 nucleotidesGFF4191 and GFF4192 are separated by 20 nucleotides GFF4190 - Electron transfer flavoprotein subunit alpha, at 209,079 to 210,050 GFF4190 GFF4191 - hypothetical protein, at 210,239 to 211,954 GFF4191 GFF4192 - Aminomethyltransferase, at 211,975 to 213,114 GFF4192 Position (kb) 210 211 212Strain fitness (log2 ratio) -2 -1 0 1 2at 209.292 kb on + strand, within GFF4190at 209.293 kb on - strand, within GFF4190at 209.307 kb on + strand, within GFF4190at 209.307 kb on + strand, within GFF4190at 209.307 kb on + strand, within GFF4190at 209.308 kb on - strand, within GFF4190at 209.308 kb on - strand, within GFF4190at 209.378 kb on + strand, within GFF4190at 209.379 kb on - strand, within GFF4190at 209.379 kb on - strand, within GFF4190at 209.379 kb on - strand, within GFF4190at 209.488 kb on - strand, within GFF4190at 209.871 kb on + strand, within GFF4190at 209.871 kb on + strand, within GFF4190at 209.872 kb on - strand, within GFF4190at 210.049 kb on - strandat 210.089 kb on + strandat 210.256 kb on + strandat 210.257 kb on - strandat 210.446 kb on + strand, within GFF4191at 210.446 kb on + strand, within GFF4191at 210.447 kb on - strand, within GFF4191at 210.497 kb on + strand, within GFF4191at 210.497 kb on + strand, within GFF4191at 210.498 kb on - strand, within GFF4191at 210.549 kb on + strand, within GFF4191at 210.612 kb on - strand, within GFF4191at 210.612 kb on - strand, within GFF4191at 210.612 kb on - strand, within GFF4191at 211.085 kb on + strand, within GFF4191at 211.565 kb on + strand, within GFF4191at 211.566 kb on - strand, within GFF4191at 211.566 kb on - strand, within GFF4191at 211.566 kb on - strand, within GFF4191at 211.566 kb on - strand, within GFF4191at 211.566 kb on - strand, within GFF4191at 211.566 kb on - strand, within GFF4191at 211.640 kb on + strand, within GFF4191at 211.640 kb on + strand, within GFF4191at 211.641 kb on - strand, within GFF4191at 211.796 kb on + strandat 211.796 kb on + strandat 211.797 kb on - strandat 211.797 kb on - strandat 211.797 kb on - strandat 211.892 kb on + strandat 211.892 kb on + strandat 211.893 kb on - strandat 211.893 kb on - strandat 212.086 kb on + strandat 212.087 kb on - strandat 212.101 kb on + strand, within GFF4192at 212.101 kb on + strand, within GFF4192at 212.101 kb on + strand, within GFF4192at 212.101 kb on + strand, within GFF4192at 212.101 kb on + strand, within GFF4192at 212.101 kb on + strand, within GFF4192at 212.102 kb on - strand, within GFF4192at 212.302 kb on + strand, within GFF4192at 212.494 kb on + strand, within GFF4192at 212.557 kb on + strand, within GFF4192at 212.573 kb on - strand, within GFF4192at 212.713 kb on + strand, within GFF4192at 212.714 kb on - strand, within GFF4192at 212.935 kb on + strand, within GFF4192at 212.935 kb on + strand, within GFF4192at 212.935 kb on + strand, within GFF4192

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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209,292 + GFF4190 0.22 +0.1
209,293 - GFF4190 0.22 +0.6
209,307 + GFF4190 0.23 -0.5
209,307 + GFF4190 0.23 +1.2
209,307 + GFF4190 0.23 +0.5
209,308 - GFF4190 0.24 -0.5
209,308 - GFF4190 0.24 +0.5
209,378 + GFF4190 0.31 +0.6
209,379 - GFF4190 0.31 -0.5
209,379 - GFF4190 0.31 +0.3
209,379 - GFF4190 0.31 +0.7
209,488 - GFF4190 0.42 -0.7
209,871 + GFF4190 0.81 +0.6
209,871 + GFF4190 0.81 +0.6
209,872 - GFF4190 0.82 +0.3
210,049 - +1.1
210,089 + -0.4
210,256 + -1.2
210,257 - -1.0
210,446 + GFF4191 0.12 +0.3
210,446 + GFF4191 0.12 +0.4
210,447 - GFF4191 0.12 -0.7
210,497 + GFF4191 0.15 -0.3
210,497 + GFF4191 0.15 +0.3
210,498 - GFF4191 0.15 -0.5
210,549 + GFF4191 0.18 +0.7
210,612 - GFF4191 0.22 +1.7
210,612 - GFF4191 0.22 +0.5
210,612 - GFF4191 0.22 +0.3
211,085 + GFF4191 0.49 -0.5
211,565 + GFF4191 0.77 -0.5
211,566 - GFF4191 0.77 +0.1
211,566 - GFF4191 0.77 -0.5
211,566 - GFF4191 0.77 -0.3
211,566 - GFF4191 0.77 +0.4
211,566 - GFF4191 0.77 -0.5
211,566 - GFF4191 0.77 +0.5
211,640 + GFF4191 0.82 -0.2
211,640 + GFF4191 0.82 +1.0
211,641 - GFF4191 0.82 -0.4
211,796 + -0.6
211,796 + -0.3
211,797 - -0.4
211,797 - +2.1
211,797 - +0.6
211,892 + +0.3
211,892 + +0.1
211,893 - -1.8
211,893 - -0.0
212,086 + +0.1
212,087 - -0.1
212,101 + GFF4192 0.11 +0.8
212,101 + GFF4192 0.11 -0.3
212,101 + GFF4192 0.11 -0.1
212,101 + GFF4192 0.11 -0.2
212,101 + GFF4192 0.11 +0.5
212,101 + GFF4192 0.11 -0.1
212,102 - GFF4192 0.11 +0.2
212,302 + GFF4192 0.29 +0.5
212,494 + GFF4192 0.46 -0.6
212,557 + GFF4192 0.51 +0.4
212,573 - GFF4192 0.52 -0.1
212,713 + GFF4192 0.65 +0.5
212,714 - GFF4192 0.65 -0.3
212,935 + GFF4192 0.84 +0.4
212,935 + GFF4192 0.84 -0.1
212,935 + GFF4192 0.84 +0.7

Or see this region's nucleotide sequence