Strain Fitness in Xanthobacter sp. DMC5 around GFF4187

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4186 and GFF4187 are separated by 141 nucleotidesGFF4187 and GFF4188 are separated by 3 nucleotides GFF4186 - Trimethylamine dehydrogenase, at 202,358 to 204,565 GFF4186 GFF4187 - putative iron-sulfur-binding oxidoreductase FadF, at 204,707 to 206,869 GFF4187 GFF4188 - hypothetical protein, at 206,873 to 208,276 GFF4188 Position (kb) 204 205 206 207Strain fitness (log2 ratio) -2 -1 0 1at 203.990 kb on + strand, within GFF4186at 203.993 kb on + strand, within GFF4186at 203.993 kb on + strand, within GFF4186at 203.993 kb on + strand, within GFF4186at 203.993 kb on + strand, within GFF4186at 203.993 kb on + strand, within GFF4186at 203.994 kb on - strand, within GFF4186at 204.074 kb on + strand, within GFF4186at 204.188 kb on + strand, within GFF4186at 204.188 kb on + strand, within GFF4186at 204.188 kb on + strand, within GFF4186at 204.189 kb on - strand, within GFF4186at 204.211 kb on + strand, within GFF4186at 204.211 kb on + strand, within GFF4186at 204.212 kb on - strand, within GFF4186at 204.221 kb on + strand, within GFF4186at 204.279 kb on - strand, within GFF4186at 204.383 kb on + strandat 204.383 kb on + strandat 204.383 kb on + strandat 204.383 kb on + strandat 204.383 kb on + strandat 204.383 kb on + strandat 204.383 kb on + strandat 204.384 kb on - strandat 204.512 kb on + strandat 204.513 kb on - strandat 204.513 kb on - strandat 204.524 kb on + strandat 204.542 kb on + strandat 204.543 kb on - strandat 204.563 kb on + strandat 204.563 kb on + strandat 204.563 kb on + strandat 204.564 kb on - strandat 204.564 kb on - strandat 204.785 kb on + strandat 204.789 kb on - strandat 204.791 kb on - strandat 204.794 kb on + strandat 204.795 kb on - strandat 204.851 kb on + strandat 205.091 kb on + strand, within GFF4187at 205.091 kb on + strand, within GFF4187at 205.092 kb on - strand, within GFF4187at 205.092 kb on - strand, within GFF4187at 205.152 kb on - strand, within GFF4187at 205.152 kb on - strand, within GFF4187at 205.197 kb on - strand, within GFF4187at 205.197 kb on - strand, within GFF4187at 205.197 kb on - strand, within GFF4187at 205.505 kb on + strand, within GFF4187at 205.506 kb on - strand, within GFF4187at 205.613 kb on + strand, within GFF4187at 205.614 kb on - strand, within GFF4187at 205.783 kb on - strand, within GFF4187at 205.783 kb on - strand, within GFF4187at 206.127 kb on - strand, within GFF4187at 206.127 kb on - strand, within GFF4187at 206.127 kb on - strand, within GFF4187at 206.127 kb on - strand, within GFF4187at 206.214 kb on - strand, within GFF4187at 206.214 kb on - strand, within GFF4187at 206.393 kb on + strand, within GFF4187at 206.393 kb on + strand, within GFF4187at 206.394 kb on - strand, within GFF4187at 206.394 kb on - strand, within GFF4187at 206.422 kb on + strand, within GFF4187at 206.483 kb on + strand, within GFF4187at 206.483 kb on + strand, within GFF4187at 206.522 kb on + strand, within GFF4187at 206.522 kb on + strand, within GFF4187at 206.522 kb on + strand, within GFF4187at 206.523 kb on - strand, within GFF4187at 206.523 kb on - strand, within GFF4187at 206.716 kb on + strandat 206.716 kb on + strandat 206.717 kb on - strandat 206.933 kb on + strandat 206.933 kb on + strandat 206.934 kb on - strandat 206.951 kb on + strandat 206.952 kb on - strandat 207.142 kb on - strand, within GFF4188

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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203,990 + GFF4186 0.74 -1.1
203,993 + GFF4186 0.74 -2.2
203,993 + GFF4186 0.74 +0.2
203,993 + GFF4186 0.74 +0.5
203,993 + GFF4186 0.74 -0.5
203,993 + GFF4186 0.74 +0.1
203,994 - GFF4186 0.74 -0.4
204,074 + GFF4186 0.78 +0.7
204,188 + GFF4186 0.83 -0.1
204,188 + GFF4186 0.83 +0.3
204,188 + GFF4186 0.83 -0.8
204,189 - GFF4186 0.83 +0.4
204,211 + GFF4186 0.84 +0.5
204,211 + GFF4186 0.84 -0.1
204,212 - GFF4186 0.84 +1.5
204,221 + GFF4186 0.84 -0.4
204,279 - GFF4186 0.87 +0.8
204,383 + -0.5
204,383 + -1.6
204,383 + -1.3
204,383 + -0.8
204,383 + +0.5
204,383 + -0.6
204,383 + +1.0
204,384 - -0.3
204,512 + +0.6
204,513 - +0.4
204,513 - +0.9
204,524 + +0.8
204,542 + +0.0
204,543 - +0.6
204,563 + +0.2
204,563 + -0.6
204,563 + -0.5
204,564 - -0.9
204,564 - -1.3
204,785 + -0.6
204,789 - -0.0
204,791 - +0.8
204,794 + -0.3
204,795 - -1.7
204,851 + +0.8
205,091 + GFF4187 0.18 -0.0
205,091 + GFF4187 0.18 -0.9
205,092 - GFF4187 0.18 +0.8
205,092 - GFF4187 0.18 +0.6
205,152 - GFF4187 0.21 -0.2
205,152 - GFF4187 0.21 -0.2
205,197 - GFF4187 0.23 -1.0
205,197 - GFF4187 0.23 +1.7
205,197 - GFF4187 0.23 -0.4
205,505 + GFF4187 0.37 +0.3
205,506 - GFF4187 0.37 -0.9
205,613 + GFF4187 0.42 +0.9
205,614 - GFF4187 0.42 -0.2
205,783 - GFF4187 0.50 +0.4
205,783 - GFF4187 0.50 +0.1
206,127 - GFF4187 0.66 -0.5
206,127 - GFF4187 0.66 +0.1
206,127 - GFF4187 0.66 +0.1
206,127 - GFF4187 0.66 -2.3
206,214 - GFF4187 0.70 +0.2
206,214 - GFF4187 0.70 -0.5
206,393 + GFF4187 0.78 +0.3
206,393 + GFF4187 0.78 -0.1
206,394 - GFF4187 0.78 -0.4
206,394 - GFF4187 0.78 -0.0
206,422 + GFF4187 0.79 -0.0
206,483 + GFF4187 0.82 -0.3
206,483 + GFF4187 0.82 -0.7
206,522 + GFF4187 0.84 +1.7
206,522 + GFF4187 0.84 +0.4
206,522 + GFF4187 0.84 +0.1
206,523 - GFF4187 0.84 +0.1
206,523 - GFF4187 0.84 +0.1
206,716 + +0.2
206,716 + -0.3
206,717 - +0.7
206,933 + -0.1
206,933 + -0.2
206,934 - +0.3
206,951 + +0.2
206,952 - -0.4
207,142 - GFF4188 0.19 -1.5

Or see this region's nucleotide sequence