Strain Fitness in Xanthobacter sp. DMC5 around GFF4139

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4137 and GFF4138 are separated by 521 nucleotidesGFF4138 and GFF4139 overlap by 11 nucleotidesGFF4139 and GFF4140 are separated by 140 nucleotides GFF4137 - Transcriptional regulatory protein ros, at 142,838 to 143,251 GFF4137 GFF4138 - Peptide methionine sulfoxide reductase MsrB, at 143,773 to 144,216 GFF4138 GFF4139 - Dipeptidyl aminopeptidase BI, at 144,206 to 146,302 GFF4139 GFF4140 - hypothetical protein, at 146,443 to 147,774 GFF4140 Position (kb) 144 145 146 147Strain fitness (log2 ratio) -2 -1 0 1 2at 143.469 kb on + strandat 143.487 kb on + strandat 143.487 kb on + strandat 143.487 kb on + strandat 143.488 kb on - strandat 143.488 kb on - strandat 143.488 kb on - strandat 143.534 kb on - strandat 143.534 kb on - strandat 143.535 kb on + strandat 143.535 kb on + strandat 143.536 kb on - strandat 143.586 kb on + strandat 143.586 kb on + strandat 143.741 kb on - strandat 143.741 kb on - strandat 143.741 kb on - strandat 143.741 kb on - strandat 143.809 kb on + strandat 143.935 kb on + strand, within GFF4138at 143.936 kb on - strand, within GFF4138at 143.983 kb on + strand, within GFF4138at 144.282 kb on - strandat 144.356 kb on + strandat 144.356 kb on + strandat 144.357 kb on - strandat 144.357 kb on - strandat 144.378 kb on - strandat 144.378 kb on - strandat 144.378 kb on - strandat 144.494 kb on + strand, within GFF4139at 144.497 kb on + strand, within GFF4139at 144.497 kb on + strand, within GFF4139at 144.497 kb on + strand, within GFF4139at 144.498 kb on - strand, within GFF4139at 144.498 kb on - strand, within GFF4139at 144.609 kb on - strand, within GFF4139at 144.609 kb on - strand, within GFF4139at 144.659 kb on + strand, within GFF4139at 144.689 kb on + strand, within GFF4139at 144.690 kb on - strand, within GFF4139at 144.690 kb on - strand, within GFF4139at 144.791 kb on + strand, within GFF4139at 144.791 kb on + strand, within GFF4139at 144.792 kb on - strand, within GFF4139at 144.792 kb on - strand, within GFF4139at 144.792 kb on - strand, within GFF4139at 144.792 kb on - strand, within GFF4139at 144.792 kb on - strand, within GFF4139at 144.792 kb on - strand, within GFF4139at 144.794 kb on + strand, within GFF4139at 144.794 kb on + strand, within GFF4139at 144.794 kb on + strand, within GFF4139at 144.795 kb on - strand, within GFF4139at 144.879 kb on - strand, within GFF4139at 144.879 kb on - strand, within GFF4139at 144.879 kb on - strand, within GFF4139at 145.331 kb on + strand, within GFF4139at 145.332 kb on - strand, within GFF4139at 145.332 kb on - strand, within GFF4139at 145.355 kb on + strand, within GFF4139at 145.388 kb on + strand, within GFF4139at 145.388 kb on + strand, within GFF4139at 145.388 kb on + strand, within GFF4139at 145.389 kb on - strand, within GFF4139at 145.389 kb on - strand, within GFF4139at 145.424 kb on + strand, within GFF4139at 145.424 kb on + strand, within GFF4139at 145.496 kb on + strand, within GFF4139at 145.496 kb on + strand, within GFF4139at 145.497 kb on - strand, within GFF4139at 145.497 kb on - strand, within GFF4139at 145.559 kb on + strand, within GFF4139at 145.559 kb on + strand, within GFF4139at 145.560 kb on - strand, within GFF4139at 145.560 kb on - strand, within GFF4139at 145.560 kb on - strand, within GFF4139at 145.604 kb on + strand, within GFF4139at 145.610 kb on + strand, within GFF4139at 145.619 kb on + strand, within GFF4139at 145.685 kb on + strand, within GFF4139at 145.685 kb on + strand, within GFF4139at 145.685 kb on + strand, within GFF4139at 145.686 kb on - strand, within GFF4139at 145.733 kb on + strand, within GFF4139at 145.734 kb on - strand, within GFF4139at 145.734 kb on - strand, within GFF4139at 145.734 kb on - strand, within GFF4139at 146.056 kb on + strand, within GFF4139at 146.056 kb on + strand, within GFF4139at 146.056 kb on + strand, within GFF4139at 146.057 kb on - strand, within GFF4139at 146.076 kb on - strand, within GFF4139at 146.123 kb on + strandat 146.123 kb on + strandat 146.123 kb on + strandat 146.264 kb on + strandat 146.265 kb on - strandat 146.374 kb on + strandat 146.429 kb on + strandat 146.429 kb on + strandat 146.429 kb on + strandat 146.429 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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143,469 + +1.3
143,487 + -0.2
143,487 + -0.3
143,487 + +0.6
143,488 - +1.6
143,488 - +1.0
143,488 - +1.3
143,534 - +0.4
143,534 - +1.6
143,535 + -1.1
143,535 + -0.6
143,536 - +0.4
143,586 + -0.3
143,586 + -0.8
143,741 - +1.4
143,741 - -0.1
143,741 - +1.2
143,741 - +1.5
143,809 + +0.5
143,935 + GFF4138 0.36 -0.1
143,936 - GFF4138 0.37 +1.3
143,983 + GFF4138 0.47 -0.3
144,282 - +1.9
144,356 + -0.6
144,356 + -0.0
144,357 - +1.2
144,357 - +1.4
144,378 - +0.6
144,378 - +0.8
144,378 - +1.7
144,494 + GFF4139 0.14 +1.0
144,497 + GFF4139 0.14 +0.5
144,497 + GFF4139 0.14 +0.3
144,497 + GFF4139 0.14 +1.4
144,498 - GFF4139 0.14 +0.8
144,498 - GFF4139 0.14 +0.8
144,609 - GFF4139 0.19 +1.2
144,609 - GFF4139 0.19 +0.4
144,659 + GFF4139 0.22 -1.0
144,689 + GFF4139 0.23 +0.4
144,690 - GFF4139 0.23 -0.2
144,690 - GFF4139 0.23 +0.3
144,791 + GFF4139 0.28 -1.5
144,791 + GFF4139 0.28 -0.3
144,792 - GFF4139 0.28 +0.4
144,792 - GFF4139 0.28 +0.5
144,792 - GFF4139 0.28 +1.1
144,792 - GFF4139 0.28 -1.0
144,792 - GFF4139 0.28 +0.3
144,792 - GFF4139 0.28 -0.4
144,794 + GFF4139 0.28 -0.5
144,794 + GFF4139 0.28 +0.6
144,794 + GFF4139 0.28 +0.2
144,795 - GFF4139 0.28 +0.6
144,879 - GFF4139 0.32 +1.2
144,879 - GFF4139 0.32 -0.0
144,879 - GFF4139 0.32 +0.8
145,331 + GFF4139 0.54 +0.3
145,332 - GFF4139 0.54 -0.2
145,332 - GFF4139 0.54 +1.1
145,355 + GFF4139 0.55 -1.5
145,388 + GFF4139 0.56 +0.2
145,388 + GFF4139 0.56 +0.2
145,388 + GFF4139 0.56 +0.1
145,389 - GFF4139 0.56 +0.8
145,389 - GFF4139 0.56 +0.8
145,424 + GFF4139 0.58 -0.1
145,424 + GFF4139 0.58 -0.3
145,496 + GFF4139 0.62 -0.1
145,496 + GFF4139 0.62 +0.3
145,497 - GFF4139 0.62 +0.7
145,497 - GFF4139 0.62 +0.8
145,559 + GFF4139 0.65 -0.1
145,559 + GFF4139 0.65 +1.4
145,560 - GFF4139 0.65 -0.9
145,560 - GFF4139 0.65 +0.9
145,560 - GFF4139 0.65 +0.9
145,604 + GFF4139 0.67 +0.0
145,610 + GFF4139 0.67 +0.5
145,619 + GFF4139 0.67 -0.9
145,685 + GFF4139 0.71 +0.1
145,685 + GFF4139 0.71 +0.1
145,685 + GFF4139 0.71 +0.5
145,686 - GFF4139 0.71 -0.2
145,733 + GFF4139 0.73 +0.4
145,734 - GFF4139 0.73 +0.8
145,734 - GFF4139 0.73 +1.5
145,734 - GFF4139 0.73 +0.2
146,056 + GFF4139 0.88 -1.8
146,056 + GFF4139 0.88 +0.6
146,056 + GFF4139 0.88 -0.4
146,057 - GFF4139 0.88 +0.0
146,076 - GFF4139 0.89 +0.7
146,123 + -0.8
146,123 + +0.4
146,123 + -0.4
146,264 + +0.3
146,265 - +1.3
146,374 + -0.3
146,429 + -0.3
146,429 + -0.5
146,429 + +0.7
146,429 + -1.6

Or see this region's nucleotide sequence