Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4106 and GFF4107 are separated by 315 nucleotides GFF4107 and GFF4108 are separated by 11 nucleotides GFF4108 and GFF4109 are separated by 67 nucleotides
GFF4106 - P-loop guanosine triphosphatase YjiA, at 97,876 to 98,910
GFF4106
GFF4107 - Protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 99,226 to 100,446
GFF4107
GFF4108 - hypothetical protein, at 100,458 to 100,784
GFF4108
GFF4109 - hypothetical protein, at 100,852 to 103,365
GFF4109
Position (kb) 99
100
101 Strain fitness (log2 ratio) -2
-1
0
1
2 at 98.909 kb on - strand at 98.909 kb on - strand at 98.973 kb on + strand at 99.373 kb on + strand, within GFF4107 at 99.374 kb on - strand, within GFF4107 at 99.374 kb on - strand, within GFF4107 at 99.487 kb on + strand, within GFF4107 at 99.488 kb on - strand, within GFF4107 at 99.488 kb on - strand, within GFF4107 at 99.877 kb on + strand, within GFF4107 at 99.943 kb on + strand, within GFF4107 at 99.955 kb on + strand, within GFF4107 at 99.955 kb on + strand, within GFF4107 at 99.955 kb on + strand, within GFF4107 at 99.956 kb on - strand, within GFF4107 at 99.956 kb on - strand, within GFF4107 at 100.028 kb on - strand, within GFF4107 at 100.028 kb on - strand, within GFF4107 at 100.280 kb on - strand, within GFF4107 at 100.402 kb on + strand at 100.402 kb on + strand at 100.402 kb on + strand at 100.403 kb on - strand at 100.403 kb on - strand at 100.403 kb on - strand at 100.404 kb on + strand at 100.431 kb on + strand at 100.501 kb on + strand, within GFF4108 at 100.502 kb on - strand, within GFF4108 at 100.502 kb on - strand, within GFF4108 at 100.502 kb on - strand, within GFF4108 at 100.502 kb on - strand, within GFF4108 at 100.502 kb on - strand, within GFF4108 at 100.557 kb on + strand, within GFF4108 at 100.557 kb on + strand, within GFF4108 at 100.557 kb on + strand, within GFF4108 at 100.557 kb on + strand, within GFF4108 at 100.558 kb on - strand, within GFF4108 at 100.558 kb on - strand, within GFF4108 at 100.558 kb on - strand, within GFF4108 at 100.558 kb on - strand, within GFF4108 at 100.558 kb on - strand, within GFF4108 at 100.647 kb on + strand, within GFF4108 at 100.647 kb on + strand, within GFF4108 at 100.648 kb on - strand, within GFF4108 at 100.648 kb on - strand, within GFF4108 at 100.779 kb on + strand at 100.779 kb on + strand at 100.779 kb on + strand at 100.780 kb on - strand at 100.780 kb on - strand at 100.782 kb on + strand at 100.853 kb on + strand at 100.853 kb on + strand at 100.853 kb on + strand at 100.854 kb on - strand at 100.854 kb on - strand at 101.297 kb on + strand, within GFF4109 at 101.297 kb on + strand, within GFF4109 at 101.298 kb on - strand, within GFF4109 at 101.298 kb on - strand, within GFF4109
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 98,909 - +1.0 98,909 - +0.1 98,973 + -0.1 99,373 + GFF4107 0.12 -0.1 99,374 - GFF4107 0.12 +0.0 99,374 - GFF4107 0.12 -0.4 99,487 + GFF4107 0.21 -0.7 99,488 - GFF4107 0.21 -0.2 99,488 - GFF4107 0.21 -0.6 99,877 + GFF4107 0.53 +0.6 99,943 + GFF4107 0.59 -1.9 99,955 + GFF4107 0.60 +0.5 99,955 + GFF4107 0.60 +0.2 99,955 + GFF4107 0.60 -0.5 99,956 - GFF4107 0.60 +0.2 99,956 - GFF4107 0.60 -0.7 100,028 - GFF4107 0.66 +1.5 100,028 - GFF4107 0.66 +0.3 100,280 - GFF4107 0.86 -0.7 100,402 + -0.2 100,402 + -0.3 100,402 + +0.2 100,403 - +0.6 100,403 - -0.7 100,403 - +0.7 100,404 + -0.3 100,431 + -0.5 100,501 + GFF4108 0.13 +0.1 100,502 - GFF4108 0.13 +0.2 100,502 - GFF4108 0.13 -0.1 100,502 - GFF4108 0.13 +0.9 100,502 - GFF4108 0.13 +0.9 100,502 - GFF4108 0.13 -0.5 100,557 + GFF4108 0.30 +0.4 100,557 + GFF4108 0.30 -0.5 100,557 + GFF4108 0.30 +1.2 100,557 + GFF4108 0.30 -0.2 100,558 - GFF4108 0.31 +0.5 100,558 - GFF4108 0.31 -2.1 100,558 - GFF4108 0.31 +1.5 100,558 - GFF4108 0.31 +0.2 100,558 - GFF4108 0.31 -0.5 100,647 + GFF4108 0.58 +1.2 100,647 + GFF4108 0.58 +0.1 100,648 - GFF4108 0.58 +1.1 100,648 - GFF4108 0.58 -0.6 100,779 + +1.6 100,779 + +0.7 100,779 + +1.1 100,780 - +0.1 100,780 - +1.5 100,782 + -0.9 100,853 + +1.2 100,853 + -0.1 100,853 + +1.1 100,854 - +0.6 100,854 - -1.4 101,297 + GFF4109 0.18 +1.9 101,297 + GFF4109 0.18 +0.2 101,298 - GFF4109 0.18 -0.7 101,298 - GFF4109 0.18 -0.3
Or see this region's nucleotide sequence