Strain Fitness in Xanthobacter sp. DMC5 around GFF4092

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4090 and GFF4091 are separated by 19 nucleotidesGFF4091 and GFF4092 are separated by 99 nucleotidesGFF4092 and GFF4093 are separated by 104 nucleotides GFF4090 - Vibriobactin utilization protein ViuB, at 82,973 to 83,746 GFF4090 GFF4091 - hypothetical protein, at 83,766 to 84,599 GFF4091 GFF4092 - hypothetical protein, at 84,699 to 85,715 GFF4092 GFF4093 - Ribonuclease Z, at 85,820 to 86,704 GFF4093 Position (kb) 84 85 86Strain fitness (log2 ratio) -2 -1 0 1 2at 83.956 kb on + strand, within GFF4091at 83.956 kb on + strand, within GFF4091at 83.956 kb on + strand, within GFF4091at 83.956 kb on + strand, within GFF4091at 83.956 kb on + strand, within GFF4091at 83.956 kb on + strand, within GFF4091at 83.956 kb on + strand, within GFF4091at 83.956 kb on + strand, within GFF4091at 83.957 kb on - strand, within GFF4091at 83.957 kb on - strand, within GFF4091at 83.957 kb on - strand, within GFF4091at 83.957 kb on - strand, within GFF4091at 83.957 kb on - strand, within GFF4091at 84.043 kb on + strand, within GFF4091at 84.043 kb on + strand, within GFF4091at 84.044 kb on - strand, within GFF4091at 84.044 kb on - strand, within GFF4091at 84.044 kb on - strand, within GFF4091at 84.073 kb on + strand, within GFF4091at 84.073 kb on + strand, within GFF4091at 84.254 kb on + strand, within GFF4091at 84.425 kb on - strand, within GFF4091at 84.469 kb on + strand, within GFF4091at 84.470 kb on - strand, within GFF4091at 84.633 kb on + strandat 84.634 kb on - strandat 84.787 kb on + strandat 84.788 kb on - strandat 84.788 kb on - strandat 84.964 kb on + strand, within GFF4092at 84.964 kb on + strand, within GFF4092at 84.964 kb on + strand, within GFF4092at 84.964 kb on + strand, within GFF4092at 84.964 kb on + strand, within GFF4092at 84.964 kb on + strand, within GFF4092at 84.965 kb on - strand, within GFF4092at 84.965 kb on - strand, within GFF4092at 85.015 kb on + strand, within GFF4092at 85.015 kb on + strand, within GFF4092at 85.016 kb on - strand, within GFF4092at 85.016 kb on - strand, within GFF4092at 85.054 kb on + strand, within GFF4092at 85.054 kb on + strand, within GFF4092at 85.054 kb on + strand, within GFF4092at 85.054 kb on + strand, within GFF4092at 85.054 kb on + strand, within GFF4092at 85.054 kb on + strand, within GFF4092at 85.054 kb on + strand, within GFF4092at 85.054 kb on + strand, within GFF4092at 85.054 kb on + strand, within GFF4092at 85.054 kb on + strand, within GFF4092at 85.055 kb on - strand, within GFF4092at 85.055 kb on - strand, within GFF4092at 85.055 kb on - strand, within GFF4092at 85.070 kb on + strand, within GFF4092at 85.070 kb on + strand, within GFF4092at 85.070 kb on + strand, within GFF4092at 85.070 kb on + strand, within GFF4092at 85.070 kb on + strand, within GFF4092at 85.071 kb on - strand, within GFF4092at 85.208 kb on + strand, within GFF4092at 85.208 kb on + strand, within GFF4092at 85.351 kb on + strand, within GFF4092at 85.351 kb on + strand, within GFF4092at 85.351 kb on + strand, within GFF4092at 85.351 kb on + strand, within GFF4092at 85.352 kb on - strand, within GFF4092at 85.352 kb on - strand, within GFF4092at 85.510 kb on + strand, within GFF4092at 85.510 kb on + strand, within GFF4092at 85.511 kb on - strand, within GFF4092at 85.594 kb on + strand, within GFF4092at 85.594 kb on + strand, within GFF4092at 85.595 kb on - strand, within GFF4092at 85.689 kb on + strandat 85.971 kb on + strand, within GFF4093at 86.052 kb on + strand, within GFF4093at 86.052 kb on + strand, within GFF4093at 86.052 kb on + strand, within GFF4093at 86.053 kb on - strand, within GFF4093at 86.053 kb on - strand, within GFF4093at 86.278 kb on + strand, within GFF4093at 86.283 kb on + strand, within GFF4093at 86.379 kb on + strand, within GFF4093at 86.380 kb on - strand, within GFF4093at 86.380 kb on - strand, within GFF4093at 86.500 kb on - strand, within GFF4093at 86.517 kb on + strand, within GFF4093at 86.517 kb on + strand, within GFF4093at 86.518 kb on - strand, within GFF4093at 86.518 kb on - strand, within GFF4093at 86.640 kb on + strandat 86.698 kb on + strandat 86.699 kb on - strandat 86.699 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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83,956 + GFF4091 0.23 +0.4
83,956 + GFF4091 0.23 +0.9
83,956 + GFF4091 0.23 -0.5
83,956 + GFF4091 0.23 -0.2
83,956 + GFF4091 0.23 -0.1
83,956 + GFF4091 0.23 +0.7
83,956 + GFF4091 0.23 +0.2
83,956 + GFF4091 0.23 +0.1
83,957 - GFF4091 0.23 +0.9
83,957 - GFF4091 0.23 +0.2
83,957 - GFF4091 0.23 -1.7
83,957 - GFF4091 0.23 -0.2
83,957 - GFF4091 0.23 +0.6
84,043 + GFF4091 0.33 -0.4
84,043 + GFF4091 0.33 -0.6
84,044 - GFF4091 0.33 +0.7
84,044 - GFF4091 0.33 -0.1
84,044 - GFF4091 0.33 -0.4
84,073 + GFF4091 0.37 +0.2
84,073 + GFF4091 0.37 +0.4
84,254 + GFF4091 0.59 +0.4
84,425 - GFF4091 0.79 +0.9
84,469 + GFF4091 0.84 +0.4
84,470 - GFF4091 0.84 -0.4
84,633 + +0.5
84,634 - +0.2
84,787 + -0.1
84,788 - -1.2
84,788 - +0.1
84,964 + GFF4092 0.26 -1.0
84,964 + GFF4092 0.26 +1.9
84,964 + GFF4092 0.26 -0.4
84,964 + GFF4092 0.26 +0.1
84,964 + GFF4092 0.26 -0.0
84,964 + GFF4092 0.26 +0.3
84,965 - GFF4092 0.26 -0.1
84,965 - GFF4092 0.26 -0.4
85,015 + GFF4092 0.31 +0.1
85,015 + GFF4092 0.31 +0.6
85,016 - GFF4092 0.31 +0.1
85,016 - GFF4092 0.31 -0.6
85,054 + GFF4092 0.35 -0.3
85,054 + GFF4092 0.35 +0.7
85,054 + GFF4092 0.35 -0.1
85,054 + GFF4092 0.35 -0.1
85,054 + GFF4092 0.35 +0.2
85,054 + GFF4092 0.35 +0.1
85,054 + GFF4092 0.35 -0.4
85,054 + GFF4092 0.35 +0.2
85,054 + GFF4092 0.35 +0.7
85,054 + GFF4092 0.35 -0.1
85,055 - GFF4092 0.35 +0.2
85,055 - GFF4092 0.35 -0.4
85,055 - GFF4092 0.35 -0.3
85,070 + GFF4092 0.36 +0.6
85,070 + GFF4092 0.36 -0.4
85,070 + GFF4092 0.36 -1.1
85,070 + GFF4092 0.36 +1.3
85,070 + GFF4092 0.36 +1.0
85,071 - GFF4092 0.37 +0.5
85,208 + GFF4092 0.50 -2.1
85,208 + GFF4092 0.50 -1.3
85,351 + GFF4092 0.64 +0.6
85,351 + GFF4092 0.64 -0.1
85,351 + GFF4092 0.64 -1.4
85,351 + GFF4092 0.64 +0.5
85,352 - GFF4092 0.64 -0.9
85,352 - GFF4092 0.64 -0.4
85,510 + GFF4092 0.80 -1.5
85,510 + GFF4092 0.80 +0.2
85,511 - GFF4092 0.80 -0.1
85,594 + GFF4092 0.88 +0.3
85,594 + GFF4092 0.88 +0.5
85,595 - GFF4092 0.88 +0.5
85,689 + +0.9
85,971 + GFF4093 0.17 +0.2
86,052 + GFF4093 0.26 +0.0
86,052 + GFF4093 0.26 -0.8
86,052 + GFF4093 0.26 +0.5
86,053 - GFF4093 0.26 -1.6
86,053 - GFF4093 0.26 +0.9
86,278 + GFF4093 0.52 +0.9
86,283 + GFF4093 0.52 +0.1
86,379 + GFF4093 0.63 +0.0
86,380 - GFF4093 0.63 +0.2
86,380 - GFF4093 0.63 -0.9
86,500 - GFF4093 0.77 -0.7
86,517 + GFF4093 0.79 -0.6
86,517 + GFF4093 0.79 -0.6
86,518 - GFF4093 0.79 +0.2
86,518 - GFF4093 0.79 +1.1
86,640 + -0.5
86,698 + +1.9
86,699 - +0.1
86,699 - -2.0

Or see this region's nucleotide sequence