Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4084 and GFF4085 are separated by 9 nucleotides GFF4085 and GFF4086 overlap by 4 nucleotides GFF4086 and GFF4087 are separated by 241 nucleotides
GFF4084 - Nitrate import ATP-binding protein NrtD, at 76,773 to 77,564
GFF4084
GFF4085 - Bicarbonate transport system permease protein CmpB, at 77,574 to 78,356
GFF4085
GFF4086 - hypothetical protein, at 78,353 to 79,138
GFF4086
GFF4087 - HTH-type transcriptional repressor CytR, at 79,380 to 80,420
GFF4087
Position (kb) 78
79
80 Strain fitness (log2 ratio) -2
-1
0
1
2 at 77.717 kb on - strand, within GFF4085 at 77.717 kb on - strand, within GFF4085 at 77.717 kb on - strand, within GFF4085 at 77.884 kb on + strand, within GFF4085 at 77.884 kb on + strand, within GFF4085 at 77.885 kb on - strand, within GFF4085 at 77.915 kb on - strand, within GFF4085 at 78.127 kb on + strand, within GFF4085 at 78.127 kb on + strand, within GFF4085 at 78.128 kb on - strand, within GFF4085 at 78.128 kb on - strand, within GFF4085 at 78.477 kb on + strand, within GFF4086 at 78.742 kb on - strand, within GFF4086 at 78.979 kb on - strand, within GFF4086 at 79.015 kb on + strand, within GFF4086 at 79.235 kb on + strand at 79.308 kb on - strand at 79.527 kb on + strand, within GFF4087 at 79.528 kb on - strand, within GFF4087 at 80.017 kb on + strand, within GFF4087 at 80.017 kb on + strand, within GFF4087 at 80.017 kb on + strand, within GFF4087 at 80.018 kb on - strand, within GFF4087
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 77,717 - GFF4085 0.18 +0.1 77,717 - GFF4085 0.18 -1.4 77,717 - GFF4085 0.18 -0.5 77,884 + GFF4085 0.40 -0.4 77,884 + GFF4085 0.40 +1.8 77,885 - GFF4085 0.40 -0.4 77,915 - GFF4085 0.44 -0.5 78,127 + GFF4085 0.71 +0.0 78,127 + GFF4085 0.71 +0.0 78,128 - GFF4085 0.71 -0.2 78,128 - GFF4085 0.71 -0.2 78,477 + GFF4086 0.16 +0.3 78,742 - GFF4086 0.49 -0.5 78,979 - GFF4086 0.80 -1.1 79,015 + GFF4086 0.84 -2.5 79,235 + +0.2 79,308 - -0.1 79,527 + GFF4087 0.14 -0.1 79,528 - GFF4087 0.14 +0.9 80,017 + GFF4087 0.61 +0.5 80,017 + GFF4087 0.61 +0.5 80,017 + GFF4087 0.61 +0.1 80,018 - GFF4087 0.61 +0.4
Or see this region's nucleotide sequence