Strain Fitness in Xanthobacter sp. DMC5 around GFF4083

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4082 and GFF4083 are separated by 47 nucleotidesGFF4083 and GFF4084 are separated by 84 nucleotidesGFF4084 and GFF4085 are separated by 9 nucleotides GFF4082 - Sulfopropanediol 3-dehydrogenase, at 74,224 to 75,537 GFF4082 GFF4083 - hypothetical protein, at 75,585 to 76,688 GFF4083 GFF4084 - Nitrate import ATP-binding protein NrtD, at 76,773 to 77,564 GFF4084 GFF4085 - Bicarbonate transport system permease protein CmpB, at 77,574 to 78,356 GFF4085 Position (kb) 75 76 77Strain fitness (log2 ratio) -2 -1 0 1at 74.592 kb on - strand, within GFF4082at 74.648 kb on + strand, within GFF4082at 74.975 kb on + strand, within GFF4082at 74.975 kb on + strand, within GFF4082at 74.975 kb on + strand, within GFF4082at 74.975 kb on + strand, within GFF4082at 74.976 kb on - strand, within GFF4082at 74.976 kb on - strand, within GFF4082at 74.976 kb on - strand, within GFF4082at 75.047 kb on + strand, within GFF4082at 75.048 kb on - strand, within GFF4082at 75.056 kb on + strand, within GFF4082at 75.056 kb on + strand, within GFF4082at 75.056 kb on + strand, within GFF4082at 75.056 kb on + strand, within GFF4082at 75.056 kb on + strand, within GFF4082at 75.057 kb on - strand, within GFF4082at 75.057 kb on - strand, within GFF4082at 75.057 kb on - strand, within GFF4082at 75.143 kb on + strand, within GFF4082at 75.143 kb on + strand, within GFF4082at 75.143 kb on + strand, within GFF4082at 75.143 kb on + strand, within GFF4082at 75.144 kb on - strand, within GFF4082at 75.144 kb on - strand, within GFF4082at 75.182 kb on + strand, within GFF4082at 75.182 kb on + strand, within GFF4082at 75.183 kb on - strand, within GFF4082at 75.183 kb on - strand, within GFF4082at 75.413 kb on + strandat 75.413 kb on + strandat 75.413 kb on + strandat 75.525 kb on - strandat 75.540 kb on - strandat 75.586 kb on + strandat 75.668 kb on - strandat 75.865 kb on + strand, within GFF4083at 75.865 kb on + strand, within GFF4083at 75.865 kb on + strand, within GFF4083at 75.865 kb on + strand, within GFF4083at 75.865 kb on + strand, within GFF4083at 75.865 kb on + strand, within GFF4083at 75.866 kb on - strand, within GFF4083at 75.932 kb on - strand, within GFF4083at 75.932 kb on - strand, within GFF4083at 76.069 kb on + strand, within GFF4083at 76.069 kb on + strand, within GFF4083at 76.075 kb on + strand, within GFF4083at 76.076 kb on - strand, within GFF4083at 76.076 kb on - strand, within GFF4083at 76.106 kb on + strand, within GFF4083at 76.207 kb on + strand, within GFF4083at 76.208 kb on - strand, within GFF4083at 76.511 kb on - strand, within GFF4083at 76.511 kb on - strand, within GFF4083at 76.511 kb on - strand, within GFF4083at 76.511 kb on - strand, within GFF4083at 76.543 kb on + strand, within GFF4083at 76.543 kb on + strand, within GFF4083at 76.544 kb on - strand, within GFF4083at 76.873 kb on + strand, within GFF4084at 76.874 kb on - strand, within GFF4084at 76.972 kb on + strand, within GFF4084at 76.972 kb on + strand, within GFF4084at 76.973 kb on - strand, within GFF4084at 76.973 kb on - strand, within GFF4084at 76.973 kb on - strand, within GFF4084at 76.973 kb on - strand, within GFF4084at 76.973 kb on - strand, within GFF4084at 77.125 kb on + strand, within GFF4084at 77.126 kb on - strand, within GFF4084at 77.180 kb on - strand, within GFF4084

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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74,592 - GFF4082 0.28 -0.8
74,648 + GFF4082 0.32 -0.1
74,975 + GFF4082 0.57 -0.1
74,975 + GFF4082 0.57 +0.1
74,975 + GFF4082 0.57 +1.4
74,975 + GFF4082 0.57 +0.2
74,976 - GFF4082 0.57 -0.2
74,976 - GFF4082 0.57 +0.7
74,976 - GFF4082 0.57 -0.5
75,047 + GFF4082 0.63 -2.5
75,048 - GFF4082 0.63 +0.3
75,056 + GFF4082 0.63 -1.5
75,056 + GFF4082 0.63 -0.1
75,056 + GFF4082 0.63 +0.2
75,056 + GFF4082 0.63 +0.9
75,056 + GFF4082 0.63 -1.3
75,057 - GFF4082 0.63 -1.0
75,057 - GFF4082 0.63 -0.9
75,057 - GFF4082 0.63 -0.6
75,143 + GFF4082 0.70 +0.2
75,143 + GFF4082 0.70 +0.4
75,143 + GFF4082 0.70 -1.1
75,143 + GFF4082 0.70 +0.5
75,144 - GFF4082 0.70 +1.4
75,144 - GFF4082 0.70 -0.7
75,182 + GFF4082 0.73 +0.0
75,182 + GFF4082 0.73 -0.3
75,183 - GFF4082 0.73 -0.1
75,183 - GFF4082 0.73 -0.3
75,413 + -0.5
75,413 + +0.6
75,413 + -0.1
75,525 - -0.1
75,540 - -0.0
75,586 + +0.1
75,668 - +0.2
75,865 + GFF4083 0.25 +1.5
75,865 + GFF4083 0.25 +1.0
75,865 + GFF4083 0.25 -0.1
75,865 + GFF4083 0.25 -0.5
75,865 + GFF4083 0.25 -2.0
75,865 + GFF4083 0.25 -0.5
75,866 - GFF4083 0.25 +0.3
75,932 - GFF4083 0.31 +0.0
75,932 - GFF4083 0.31 -0.2
76,069 + GFF4083 0.44 -1.1
76,069 + GFF4083 0.44 +0.2
76,075 + GFF4083 0.44 +0.8
76,076 - GFF4083 0.44 +0.6
76,076 - GFF4083 0.44 -0.2
76,106 + GFF4083 0.47 -1.6
76,207 + GFF4083 0.56 +0.4
76,208 - GFF4083 0.56 +0.0
76,511 - GFF4083 0.84 +0.7
76,511 - GFF4083 0.84 -1.6
76,511 - GFF4083 0.84 -0.9
76,511 - GFF4083 0.84 -0.4
76,543 + GFF4083 0.87 +0.9
76,543 + GFF4083 0.87 -2.3
76,544 - GFF4083 0.87 -1.2
76,873 + GFF4084 0.13 +0.8
76,874 - GFF4084 0.13 +0.1
76,972 + GFF4084 0.25 -0.8
76,972 + GFF4084 0.25 +0.0
76,973 - GFF4084 0.25 +0.5
76,973 - GFF4084 0.25 -0.5
76,973 - GFF4084 0.25 -1.2
76,973 - GFF4084 0.25 +0.5
76,973 - GFF4084 0.25 +1.2
77,125 + GFF4084 0.44 +0.1
77,126 - GFF4084 0.45 +0.9
77,180 - GFF4084 0.51 -0.1

Or see this region's nucleotide sequence