Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4062 and GFF4063 are separated by 87 nucleotides GFF4063 and GFF4064 overlap by 4 nucleotides
GFF4062 - hypothetical protein, at 55,230 to 56,237
GFF4062
GFF4063 - Acetolactate synthase large subunit IlvG, at 56,325 to 58,004
GFF4063
GFF4064 - 8-methylmenaquinol:fumarate reductase flavoprotein subunit, at 58,001 to 59,731
GFF4064
Position (kb) 56
57
58
59 Strain fitness (log2 ratio) -2
-1
0
1 at 55.429 kb on + strand, within GFF4062 at 55.429 kb on + strand, within GFF4062 at 55.430 kb on - strand, within GFF4062 at 55.430 kb on - strand, within GFF4062 at 55.504 kb on + strand, within GFF4062 at 55.962 kb on + strand, within GFF4062 at 56.038 kb on + strand, within GFF4062 at 56.039 kb on - strand, within GFF4062 at 56.506 kb on + strand, within GFF4063 at 56.507 kb on - strand, within GFF4063 at 56.527 kb on + strand, within GFF4063 at 56.527 kb on - strand, within GFF4063 at 56.528 kb on - strand, within GFF4063 at 56.528 kb on - strand, within GFF4063 at 56.631 kb on - strand, within GFF4063 at 57.776 kb on + strand, within GFF4063 at 57.830 kb on - strand, within GFF4063 at 57.850 kb on + strand at 57.850 kb on + strand at 57.850 kb on + strand at 57.851 kb on - strand at 57.851 kb on - strand at 58.103 kb on - strand at 58.103 kb on - strand at 58.103 kb on - strand at 58.103 kb on - strand at 58.103 kb on - strand at 58.103 kb on - strand at 58.104 kb on + strand at 58.105 kb on - strand at 58.105 kb on - strand at 58.114 kb on + strand at 58.115 kb on - strand at 58.381 kb on - strand, within GFF4064 at 58.539 kb on - strand, within GFF4064 at 58.614 kb on + strand, within GFF4064 at 58.671 kb on + strand, within GFF4064 at 58.671 kb on + strand, within GFF4064 at 58.672 kb on - strand, within GFF4064 at 58.821 kb on + strand, within GFF4064 at 58.821 kb on + strand, within GFF4064 at 58.822 kb on - strand, within GFF4064 at 58.893 kb on + strand, within GFF4064 at 58.893 kb on + strand, within GFF4064 at 58.893 kb on + strand, within GFF4064 at 58.894 kb on - strand, within GFF4064 at 58.894 kb on - strand, within GFF4064 at 58.894 kb on - strand, within GFF4064
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 55,429 + GFF4062 0.20 -1.3 55,429 + GFF4062 0.20 -0.7 55,430 - GFF4062 0.20 +0.9 55,430 - GFF4062 0.20 -0.6 55,504 + GFF4062 0.27 +0.3 55,962 + GFF4062 0.73 -0.9 56,038 + GFF4062 0.80 -0.3 56,039 - GFF4062 0.80 -0.4 56,506 + GFF4063 0.11 +0.7 56,507 - GFF4063 0.11 -0.5 56,527 + GFF4063 0.12 +0.7 56,527 - GFF4063 0.12 -0.8 56,528 - GFF4063 0.12 +0.1 56,528 - GFF4063 0.12 +0.7 56,631 - GFF4063 0.18 -1.1 57,776 + GFF4063 0.86 +0.5 57,830 - GFF4063 0.90 +0.1 57,850 + +0.8 57,850 + -0.6 57,850 + +0.9 57,851 - -0.9 57,851 - +0.4 58,103 - -0.8 58,103 - -0.1 58,103 - -2.1 58,103 - +0.4 58,103 - -1.1 58,103 - +0.1 58,104 + +0.1 58,105 - +0.4 58,105 - -0.3 58,114 + -0.1 58,115 - +0.1 58,381 - GFF4064 0.22 -0.0 58,539 - GFF4064 0.31 -1.0 58,614 + GFF4064 0.35 +0.7 58,671 + GFF4064 0.39 -0.1 58,671 + GFF4064 0.39 -0.8 58,672 - GFF4064 0.39 -0.1 58,821 + GFF4064 0.47 -0.5 58,821 + GFF4064 0.47 -0.1 58,822 - GFF4064 0.47 +1.3 58,893 + GFF4064 0.52 +0.1 58,893 + GFF4064 0.52 -0.4 58,893 + GFF4064 0.52 -0.9 58,894 - GFF4064 0.52 -1.3 58,894 - GFF4064 0.52 -0.4 58,894 - GFF4064 0.52 +0.6
Or see this region's nucleotide sequence