Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4060 and GFF4061 are separated by 9 nucleotides GFF4061 and GFF4062 are separated by 159 nucleotides
GFF4060 - Phosphate acetyltransferase, at 53,799 to 54,878
GFF4060
GFF4061 - hypothetical protein, at 54,888 to 55,070
GFF4061
GFF4062 - hypothetical protein, at 55,230 to 56,237
GFF4062
Position (kb) 53
54
55 Strain fitness (log2 ratio) -2
-1
0
1 at 52.809 kb on - strand at 52.809 kb on - strand at 53.219 kb on + strand at 53.252 kb on + strand at 53.252 kb on + strand at 53.397 kb on + strand at 53.398 kb on - strand at 53.492 kb on + strand at 53.493 kb on - strand at 53.606 kb on + strand at 54.027 kb on + strand, within GFF4060 at 54.027 kb on + strand, within GFF4060 at 54.227 kb on + strand, within GFF4060 at 54.227 kb on + strand, within GFF4060 at 54.270 kb on + strand, within GFF4060 at 54.270 kb on + strand, within GFF4060 at 54.270 kb on + strand, within GFF4060 at 54.270 kb on + strand, within GFF4060 at 54.271 kb on - strand, within GFF4060 at 54.271 kb on - strand, within GFF4060 at 54.291 kb on + strand, within GFF4060 at 54.291 kb on + strand, within GFF4060 at 54.291 kb on + strand, within GFF4060 at 54.292 kb on - strand, within GFF4060 at 54.292 kb on - strand, within GFF4060 at 54.292 kb on - strand, within GFF4060 at 54.292 kb on - strand, within GFF4060 at 54.372 kb on + strand, within GFF4060 at 54.373 kb on - strand, within GFF4060 at 54.481 kb on + strand, within GFF4060 at 54.481 kb on + strand, within GFF4060 at 54.604 kb on + strand, within GFF4060 at 54.926 kb on - strand, within GFF4061 at 55.103 kb on + strand at 55.103 kb on + strand at 55.103 kb on + strand at 55.103 kb on + strand at 55.103 kb on + strand at 55.104 kb on - strand at 55.104 kb on - strand at 55.106 kb on - strand at 55.196 kb on + strand at 55.218 kb on - strand at 55.227 kb on - strand at 55.227 kb on - strand at 55.429 kb on + strand, within GFF4062 at 55.429 kb on + strand, within GFF4062 at 55.430 kb on - strand, within GFF4062 at 55.430 kb on - strand, within GFF4062 at 55.504 kb on + strand, within GFF4062
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 52,809 - +0.1 52,809 - -1.9 53,219 + -1.4 53,252 + -0.8 53,252 + +0.2 53,397 + +0.3 53,398 - +1.2 53,492 + -0.1 53,493 - +0.7 53,606 + -0.1 54,027 + GFF4060 0.21 -0.4 54,027 + GFF4060 0.21 -0.6 54,227 + GFF4060 0.40 -0.8 54,227 + GFF4060 0.40 -0.3 54,270 + GFF4060 0.44 +0.2 54,270 + GFF4060 0.44 +0.5 54,270 + GFF4060 0.44 +0.6 54,270 + GFF4060 0.44 -1.2 54,271 - GFF4060 0.44 -0.7 54,271 - GFF4060 0.44 -0.5 54,291 + GFF4060 0.46 +0.2 54,291 + GFF4060 0.46 +0.3 54,291 + GFF4060 0.46 -0.5 54,292 - GFF4060 0.46 +0.4 54,292 - GFF4060 0.46 +0.5 54,292 - GFF4060 0.46 -1.3 54,292 - GFF4060 0.46 +0.6 54,372 + GFF4060 0.53 +0.1 54,373 - GFF4060 0.53 -0.5 54,481 + GFF4060 0.63 -0.5 54,481 + GFF4060 0.63 -0.5 54,604 + GFF4060 0.75 +0.9 54,926 - GFF4061 0.21 -0.5 55,103 + -1.4 55,103 + -1.2 55,103 + +0.2 55,103 + -1.1 55,103 + +0.5 55,104 - +0.4 55,104 - -0.4 55,106 - +0.3 55,196 + -0.4 55,218 - +0.7 55,227 - -0.1 55,227 - -0.7 55,429 + GFF4062 0.20 -1.3 55,429 + GFF4062 0.20 -0.7 55,430 - GFF4062 0.20 +0.9 55,430 - GFF4062 0.20 -0.6 55,504 + GFF4062 0.27 +0.3
Or see this region's nucleotide sequence