Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4045 and GFF4046 overlap by 4 nucleotides GFF4046 and GFF4047 overlap by 4 nucleotides GFF4047 and GFF4048 are separated by 54 nucleotides GFF4048 and GFF4049 are separated by 22 nucleotides
GFF4045 - Nicotinate dehydrogenase subunit B, at 27,619 to 28,962
GFF4045
GFF4046 - Nicotinate dehydrogenase subunit A, at 28,959 to 29,453
GFF4046
GFF4047 - Nicotinate dehydrogenase subunit B, at 29,450 to 31,705
GFF4047
GFF4048 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 31,760 to 32,536
GFF4048
GFF4049 - 2,6-dihydroxypyridine 3-monooxygenase, at 32,559 to 33,674
GFF4049
Position (kb) 29
30
31
32 Strain fitness (log2 ratio) -2
-1
0
1
2 at 28.483 kb on + strand, within GFF4045 at 28.484 kb on - strand, within GFF4045 at 28.843 kb on + strand at 28.844 kb on - strand at 29.025 kb on + strand, within GFF4046 at 29.025 kb on + strand, within GFF4046 at 29.025 kb on + strand, within GFF4046 at 29.026 kb on - strand, within GFF4046 at 29.026 kb on - strand, within GFF4046 at 29.254 kb on - strand, within GFF4046 at 29.466 kb on + strand at 29.466 kb on + strand at 29.466 kb on + strand at 29.467 kb on - strand at 29.795 kb on + strand, within GFF4047 at 29.796 kb on - strand, within GFF4047 at 29.796 kb on - strand, within GFF4047 at 29.796 kb on - strand, within GFF4047 at 30.013 kb on + strand, within GFF4047 at 30.107 kb on + strand, within GFF4047 at 30.107 kb on + strand, within GFF4047 at 30.107 kb on + strand, within GFF4047 at 30.107 kb on + strand, within GFF4047 at 30.107 kb on + strand, within GFF4047 at 30.107 kb on + strand, within GFF4047 at 30.107 kb on + strand, within GFF4047 at 30.108 kb on - strand, within GFF4047 at 30.108 kb on - strand, within GFF4047 at 30.108 kb on - strand, within GFF4047 at 30.108 kb on - strand, within GFF4047 at 30.108 kb on - strand, within GFF4047 at 30.108 kb on - strand, within GFF4047 at 30.461 kb on + strand, within GFF4047 at 30.462 kb on - strand, within GFF4047 at 30.503 kb on + strand, within GFF4047 at 30.551 kb on + strand, within GFF4047 at 30.552 kb on - strand, within GFF4047 at 30.552 kb on - strand, within GFF4047 at 30.635 kb on + strand, within GFF4047 at 30.635 kb on + strand, within GFF4047 at 30.971 kb on + strand, within GFF4047 at 30.972 kb on - strand, within GFF4047 at 31.233 kb on - strand, within GFF4047 at 31.253 kb on + strand, within GFF4047 at 31.271 kb on + strand, within GFF4047 at 31.272 kb on - strand, within GFF4047 at 31.272 kb on - strand, within GFF4047 at 31.272 kb on - strand, within GFF4047 at 31.485 kb on - strand at 31.997 kb on - strand, within GFF4048 at 32.114 kb on + strand, within GFF4048 at 32.180 kb on + strand, within GFF4048 at 32.205 kb on - strand, within GFF4048 at 32.456 kb on + strand, within GFF4048 at 32.456 kb on + strand, within GFF4048 at 32.457 kb on - strand, within GFF4048 at 32.457 kb on - strand, within GFF4048 at 32.457 kb on - strand, within GFF4048 at 32.457 kb on - strand, within GFF4048 at 32.457 kb on - strand, within GFF4048 at 32.534 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 28,483 + GFF4045 0.64 -0.3 28,484 - GFF4045 0.64 +0.4 28,843 + +1.3 28,844 - +0.1 29,025 + GFF4046 0.13 -1.2 29,025 + GFF4046 0.13 -1.1 29,025 + GFF4046 0.13 +0.2 29,026 - GFF4046 0.14 +0.4 29,026 - GFF4046 0.14 -0.5 29,254 - GFF4046 0.60 +1.1 29,466 + +0.1 29,466 + -0.3 29,466 + -0.3 29,467 - -1.2 29,795 + GFF4047 0.15 +1.1 29,796 - GFF4047 0.15 -2.0 29,796 - GFF4047 0.15 -0.3 29,796 - GFF4047 0.15 -0.9 30,013 + GFF4047 0.25 -0.2 30,107 + GFF4047 0.29 +0.0 30,107 + GFF4047 0.29 -0.1 30,107 + GFF4047 0.29 +0.0 30,107 + GFF4047 0.29 -0.5 30,107 + GFF4047 0.29 -0.3 30,107 + GFF4047 0.29 -0.3 30,107 + GFF4047 0.29 -0.1 30,108 - GFF4047 0.29 +0.8 30,108 - GFF4047 0.29 -0.5 30,108 - GFF4047 0.29 +2.3 30,108 - GFF4047 0.29 -0.4 30,108 - GFF4047 0.29 -0.5 30,108 - GFF4047 0.29 +0.3 30,461 + GFF4047 0.45 +0.1 30,462 - GFF4047 0.45 -1.0 30,503 + GFF4047 0.47 -0.2 30,551 + GFF4047 0.49 +0.1 30,552 - GFF4047 0.49 +0.2 30,552 - GFF4047 0.49 -1.0 30,635 + GFF4047 0.53 +0.6 30,635 + GFF4047 0.53 -1.4 30,971 + GFF4047 0.67 -0.3 30,972 - GFF4047 0.67 +0.4 31,233 - GFF4047 0.79 -0.2 31,253 + GFF4047 0.80 -1.1 31,271 + GFF4047 0.81 +0.7 31,272 - GFF4047 0.81 -1.3 31,272 - GFF4047 0.81 +0.4 31,272 - GFF4047 0.81 -0.4 31,485 - -1.2 31,997 - GFF4048 0.31 -0.0 32,114 + GFF4048 0.46 -1.0 32,180 + GFF4048 0.54 +0.4 32,205 - GFF4048 0.57 +1.9 32,456 + GFF4048 0.90 +0.1 32,456 + GFF4048 0.90 -0.3 32,457 - GFF4048 0.90 +0.4 32,457 - GFF4048 0.90 -0.2 32,457 - GFF4048 0.90 -0.0 32,457 - GFF4048 0.90 -1.3 32,457 - GFF4048 0.90 +1.1 32,534 + -0.6
Or see this region's nucleotide sequence