Strain Fitness in Xanthobacter sp. DMC5 around GFF4045

Experiment: D,L-Lactate and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4043 and GFF4044 overlap by 4 nucleotidesGFF4044 and GFF4045 are separated by 191 nucleotidesGFF4045 and GFF4046 overlap by 4 nucleotidesGFF4046 and GFF4047 overlap by 4 nucleotides GFF4043 - hypothetical protein, at 26,331 to 26,876 GFF4043 GFF4044 - Alkyl hydroperoxide reductase E, at 26,873 to 27,427 GFF4044 GFF4045 - Nicotinate dehydrogenase subunit B, at 27,619 to 28,962 GFF4045 GFF4046 - Nicotinate dehydrogenase subunit A, at 28,959 to 29,453 GFF4046 GFF4047 - Nicotinate dehydrogenase subunit B, at 29,450 to 31,705 GFF4047 Position (kb) 27 28 29Strain fitness (log2 ratio) -2 -1 0 1 2at 26.761 kb on + strand, within GFF4043at 26.788 kb on + strand, within GFF4043at 26.789 kb on - strand, within GFF4043at 26.797 kb on + strand, within GFF4043at 26.797 kb on + strand, within GFF4043at 26.889 kb on + strandat 26.889 kb on + strandat 26.890 kb on - strandat 26.890 kb on - strandat 26.890 kb on - strandat 27.000 kb on + strand, within GFF4044at 27.000 kb on + strand, within GFF4044at 27.001 kb on - strand, within GFF4044at 27.001 kb on - strand, within GFF4044at 27.001 kb on - strand, within GFF4044at 27.073 kb on - strand, within GFF4044at 27.081 kb on + strand, within GFF4044at 27.082 kb on - strand, within GFF4044at 27.237 kb on + strand, within GFF4044at 27.237 kb on + strand, within GFF4044at 27.238 kb on - strand, within GFF4044at 27.238 kb on - strand, within GFF4044at 27.282 kb on + strand, within GFF4044at 27.282 kb on + strand, within GFF4044at 27.283 kb on - strand, within GFF4044at 27.524 kb on + strandat 27.524 kb on + strandat 27.525 kb on - strandat 27.549 kb on + strandat 27.682 kb on + strandat 27.682 kb on + strandat 27.701 kb on + strandat 27.862 kb on + strand, within GFF4045at 27.863 kb on - strand, within GFF4045at 27.863 kb on - strand, within GFF4045at 27.985 kb on + strand, within GFF4045at 28.096 kb on - strand, within GFF4045at 28.312 kb on + strand, within GFF4045at 28.372 kb on + strand, within GFF4045at 28.372 kb on + strand, within GFF4045at 28.373 kb on - strand, within GFF4045at 28.398 kb on - strand, within GFF4045at 28.483 kb on + strand, within GFF4045at 28.484 kb on - strand, within GFF4045at 28.843 kb on + strandat 28.844 kb on - strandat 29.025 kb on + strand, within GFF4046at 29.025 kb on + strand, within GFF4046at 29.025 kb on + strand, within GFF4046at 29.026 kb on - strand, within GFF4046at 29.026 kb on - strand, within GFF4046at 29.254 kb on - strand, within GFF4046at 29.466 kb on + strandat 29.466 kb on + strandat 29.466 kb on + strandat 29.467 kb on - strandat 29.795 kb on + strand, within GFF4047at 29.796 kb on - strand, within GFF4047at 29.796 kb on - strand, within GFF4047at 29.796 kb on - strand, within GFF4047

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
remove
26,761 + GFF4043 0.79 +0.0
26,788 + GFF4043 0.84 -0.4
26,789 - GFF4043 0.84 +0.8
26,797 + GFF4043 0.85 +1.9
26,797 + GFF4043 0.85 -0.6
26,889 + -0.9
26,889 + +0.5
26,890 - +1.2
26,890 - -0.9
26,890 - -0.0
27,000 + GFF4044 0.23 -0.8
27,000 + GFF4044 0.23 +0.4
27,001 - GFF4044 0.23 +0.0
27,001 - GFF4044 0.23 -1.0
27,001 - GFF4044 0.23 +1.1
27,073 - GFF4044 0.36 +0.3
27,081 + GFF4044 0.37 -0.8
27,082 - GFF4044 0.38 +0.6
27,237 + GFF4044 0.66 +0.4
27,237 + GFF4044 0.66 -0.7
27,238 - GFF4044 0.66 +0.2
27,238 - GFF4044 0.66 -0.1
27,282 + GFF4044 0.74 -0.7
27,282 + GFF4044 0.74 +0.4
27,283 - GFF4044 0.74 -0.6
27,524 + -1.4
27,524 + +0.1
27,525 - -0.8
27,549 + -1.0
27,682 + -1.3
27,682 + -0.6
27,701 + +0.5
27,862 + GFF4045 0.18 -0.6
27,863 - GFF4045 0.18 -1.5
27,863 - GFF4045 0.18 +0.6
27,985 + GFF4045 0.27 -0.5
28,096 - GFF4045 0.35 -0.2
28,312 + GFF4045 0.52 -0.3
28,372 + GFF4045 0.56 +0.4
28,372 + GFF4045 0.56 +0.4
28,373 - GFF4045 0.56 +0.5
28,398 - GFF4045 0.58 +0.6
28,483 + GFF4045 0.64 -0.3
28,484 - GFF4045 0.64 +0.4
28,843 + +1.3
28,844 - +0.1
29,025 + GFF4046 0.13 -1.2
29,025 + GFF4046 0.13 -1.1
29,025 + GFF4046 0.13 +0.2
29,026 - GFF4046 0.14 +0.4
29,026 - GFF4046 0.14 -0.5
29,254 - GFF4046 0.60 +1.1
29,466 + +0.1
29,466 + -0.3
29,466 + -0.3
29,467 - -1.2
29,795 + GFF4047 0.15 +1.1
29,796 - GFF4047 0.15 -2.0
29,796 - GFF4047 0.15 -0.3
29,796 - GFF4047 0.15 -0.9

Or see this region's nucleotide sequence