Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3968 and GFF3969 are separated by 27 nucleotides GFF3969 and GFF3970 are separated by 132 nucleotides GFF3970 and GFF3971 are separated by 146 nucleotides GFF3971 and GFF3972 are separated by 80 nucleotides
GFF3968 - ATP synthase subunit beta, at 337,307 to 338,743
GFF3968
GFF3969 - hypothetical protein, at 338,771 to 339,004
GFF3969
GFF3970 - ATP synthase epsilon chain, at 339,137 to 339,559
GFF3970
GFF3971 - tRNA-specific adenosine deaminase, at 339,706 to 340,317
GFF3971
GFF3972 - CRP-like cAMP-activated global transcriptional regulator, at 340,398 to 341,174
GFF3972
Position (kb) 339
340
341 Strain fitness (log2 ratio) -1
0
1 at 339.515 kb on + strand, within GFF3970 at 339.516 kb on - strand, within GFF3970 at 339.516 kb on - strand, within GFF3970 at 339.516 kb on - strand, within GFF3970 at 339.516 kb on - strand, within GFF3970 at 339.516 kb on - strand, within GFF3970 at 340.078 kb on + strand, within GFF3971 at 340.078 kb on + strand, within GFF3971 at 340.079 kb on - strand, within GFF3971 at 340.352 kb on + strand at 340.352 kb on + strand at 340.352 kb on + strand at 340.353 kb on - strand at 340.390 kb on + strand at 340.390 kb on + strand at 340.588 kb on - strand, within GFF3972 at 340.705 kb on - strand, within GFF3972 at 340.893 kb on + strand, within GFF3972 at 340.894 kb on - strand, within GFF3972 at 340.974 kb on + strand, within GFF3972 at 340.974 kb on + strand, within GFF3972 at 340.974 kb on + strand, within GFF3972 at 340.975 kb on - strand, within GFF3972 at 340.975 kb on - strand, within GFF3972 at 340.975 kb on - strand, within GFF3972 at 340.975 kb on - strand, within GFF3972 at 341.133 kb on + strand at 341.249 kb on - strand at 341.249 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 339,515 + GFF3970 0.89 -0.4 339,516 - GFF3970 0.90 -0.0 339,516 - GFF3970 0.90 -0.3 339,516 - GFF3970 0.90 +1.4 339,516 - GFF3970 0.90 +0.5 339,516 - GFF3970 0.90 +0.3 340,078 + GFF3971 0.61 +0.1 340,078 + GFF3971 0.61 -0.1 340,079 - GFF3971 0.61 +0.0 340,352 + -0.1 340,352 + -0.8 340,352 + -0.7 340,353 - -0.1 340,390 + +1.2 340,390 + +0.5 340,588 - GFF3972 0.24 +1.1 340,705 - GFF3972 0.40 +0.3 340,893 + GFF3972 0.64 +0.3 340,894 - GFF3972 0.64 +0.5 340,974 + GFF3972 0.74 -0.5 340,974 + GFF3972 0.74 +0.8 340,974 + GFF3972 0.74 -0.2 340,975 - GFF3972 0.74 +0.6 340,975 - GFF3972 0.74 -0.4 340,975 - GFF3972 0.74 -0.4 340,975 - GFF3972 0.74 +0.7 341,133 + -0.4 341,249 - -0.1 341,249 - +0.1
Or see this region's nucleotide sequence