Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3911 and GFF3912 are separated by 123 nucleotides GFF3912 and GFF3913 are separated by 565 nucleotides
GFF3911 - Oxamate amidohydrolase proenzyme, at 277,419 to 279,026
GFF3911
GFF3912 - hypothetical protein, at 279,150 to 279,986
GFF3912
GFF3913 - RNA polymerase-binding transcription factor CarD, at 280,552 to 281,139
GFF3913
Position (kb) 279
280 Strain fitness (log2 ratio) -1
0
1
2 at 278.459 kb on + strand, within GFF3911 at 278.506 kb on - strand, within GFF3911 at 278.506 kb on - strand, within GFF3911 at 278.506 kb on - strand, within GFF3911 at 278.521 kb on - strand, within GFF3911 at 278.521 kb on - strand, within GFF3911 at 278.873 kb on - strand at 278.873 kb on - strand at 278.922 kb on + strand at 279.076 kb on - strand at 279.222 kb on + strand at 279.223 kb on - strand at 279.301 kb on - strand, within GFF3912 at 279.301 kb on - strand, within GFF3912 at 279.345 kb on + strand, within GFF3912 at 279.346 kb on - strand, within GFF3912 at 279.346 kb on - strand, within GFF3912 at 279.381 kb on + strand, within GFF3912 at 279.381 kb on + strand, within GFF3912 at 279.382 kb on - strand, within GFF3912 at 279.382 kb on - strand, within GFF3912 at 279.382 kb on - strand, within GFF3912 at 279.382 kb on - strand, within GFF3912 at 279.513 kb on + strand, within GFF3912 at 279.543 kb on + strand, within GFF3912 at 279.549 kb on + strand, within GFF3912 at 279.549 kb on + strand, within GFF3912 at 279.550 kb on - strand, within GFF3912 at 279.588 kb on + strand, within GFF3912 at 279.750 kb on + strand, within GFF3912 at 279.750 kb on + strand, within GFF3912 at 279.879 kb on + strand, within GFF3912 at 279.880 kb on - strand, within GFF3912 at 279.880 kb on - strand, within GFF3912 at 279.880 kb on - strand, within GFF3912 at 279.886 kb on - strand, within GFF3912 at 279.886 kb on - strand, within GFF3912
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 278,459 + GFF3911 0.65 +0.4 278,506 - GFF3911 0.68 -1.5 278,506 - GFF3911 0.68 -0.2 278,506 - GFF3911 0.68 -0.0 278,521 - GFF3911 0.69 +0.1 278,521 - GFF3911 0.69 -0.5 278,873 - -0.6 278,873 - -0.4 278,922 + +1.9 279,076 - -1.3 279,222 + +0.2 279,223 - -0.6 279,301 - GFF3912 0.18 +0.7 279,301 - GFF3912 0.18 -0.4 279,345 + GFF3912 0.23 -0.3 279,346 - GFF3912 0.23 -0.3 279,346 - GFF3912 0.23 +0.1 279,381 + GFF3912 0.28 +0.6 279,381 + GFF3912 0.28 +0.7 279,382 - GFF3912 0.28 +1.0 279,382 - GFF3912 0.28 -0.1 279,382 - GFF3912 0.28 +1.0 279,382 - GFF3912 0.28 +0.2 279,513 + GFF3912 0.43 -0.5 279,543 + GFF3912 0.47 -0.4 279,549 + GFF3912 0.48 +1.2 279,549 + GFF3912 0.48 -0.1 279,550 - GFF3912 0.48 +0.3 279,588 + GFF3912 0.52 -0.8 279,750 + GFF3912 0.72 +0.4 279,750 + GFF3912 0.72 +0.4 279,879 + GFF3912 0.87 -0.6 279,880 - GFF3912 0.87 -0.9 279,880 - GFF3912 0.87 +0.3 279,880 - GFF3912 0.87 +0.3 279,886 - GFF3912 0.88 -0.1 279,886 - GFF3912 0.88 +0.7
Or see this region's nucleotide sequence