Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3909 and GFF3910 are separated by 6 nucleotides GFF3910 and GFF3911 are separated by 171 nucleotides GFF3911 and GFF3912 are separated by 123 nucleotides
GFF3909 - hypothetical protein, at 276,321 to 276,998
GFF3909
GFF3910 - hypothetical protein, at 277,005 to 277,247
GFF3910
GFF3911 - Oxamate amidohydrolase proenzyme, at 277,419 to 279,026
GFF3911
GFF3912 - hypothetical protein, at 279,150 to 279,986
GFF3912
Position (kb) 277
278
279
280 Strain fitness (log2 ratio) -1
0
1
2
3 at 276.633 kb on + strand, within GFF3909 at 276.633 kb on + strand, within GFF3909 at 276.634 kb on - strand, within GFF3909 at 276.687 kb on + strand, within GFF3909 at 276.687 kb on + strand, within GFF3909 at 276.688 kb on - strand, within GFF3909 at 277.046 kb on - strand, within GFF3910 at 277.060 kb on + strand, within GFF3910 at 277.096 kb on + strand, within GFF3910 at 277.096 kb on + strand, within GFF3910 at 277.096 kb on + strand, within GFF3910 at 277.333 kb on + strand at 277.333 kb on + strand at 277.333 kb on + strand at 277.333 kb on + strand at 277.334 kb on - strand at 277.334 kb on - strand at 277.334 kb on - strand at 277.334 kb on - strand at 277.438 kb on - strand at 277.438 kb on - strand at 277.576 kb on - strand at 277.576 kb on - strand at 277.644 kb on + strand, within GFF3911 at 277.644 kb on + strand, within GFF3911 at 277.645 kb on - strand, within GFF3911 at 277.647 kb on - strand, within GFF3911 at 277.649 kb on - strand, within GFF3911 at 278.128 kb on - strand, within GFF3911 at 278.459 kb on + strand, within GFF3911 at 278.506 kb on - strand, within GFF3911 at 278.506 kb on - strand, within GFF3911 at 278.506 kb on - strand, within GFF3911 at 278.521 kb on - strand, within GFF3911 at 278.521 kb on - strand, within GFF3911 at 278.873 kb on - strand at 278.873 kb on - strand at 278.922 kb on + strand at 279.076 kb on - strand at 279.222 kb on + strand at 279.223 kb on - strand at 279.301 kb on - strand, within GFF3912 at 279.301 kb on - strand, within GFF3912 at 279.345 kb on + strand, within GFF3912 at 279.346 kb on - strand, within GFF3912 at 279.346 kb on - strand, within GFF3912 at 279.381 kb on + strand, within GFF3912 at 279.381 kb on + strand, within GFF3912 at 279.382 kb on - strand, within GFF3912 at 279.382 kb on - strand, within GFF3912 at 279.382 kb on - strand, within GFF3912 at 279.382 kb on - strand, within GFF3912 at 279.513 kb on + strand, within GFF3912 at 279.543 kb on + strand, within GFF3912 at 279.549 kb on + strand, within GFF3912 at 279.549 kb on + strand, within GFF3912 at 279.550 kb on - strand, within GFF3912 at 279.588 kb on + strand, within GFF3912 at 279.750 kb on + strand, within GFF3912 at 279.750 kb on + strand, within GFF3912 at 279.879 kb on + strand, within GFF3912 at 279.880 kb on - strand, within GFF3912 at 279.880 kb on - strand, within GFF3912 at 279.880 kb on - strand, within GFF3912 at 279.886 kb on - strand, within GFF3912 at 279.886 kb on - strand, within GFF3912
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 276,633 + GFF3909 0.46 -0.4 276,633 + GFF3909 0.46 +2.9 276,634 - GFF3909 0.46 -1.2 276,687 + GFF3909 0.54 +1.4 276,687 + GFF3909 0.54 +0.6 276,688 - GFF3909 0.54 -0.6 277,046 - GFF3910 0.17 -0.8 277,060 + GFF3910 0.23 +1.3 277,096 + GFF3910 0.37 -0.4 277,096 + GFF3910 0.37 -0.9 277,096 + GFF3910 0.37 +1.4 277,333 + +0.4 277,333 + -1.3 277,333 + +0.7 277,333 + -0.5 277,334 - +1.1 277,334 - +0.5 277,334 - +0.8 277,334 - +0.2 277,438 - +0.4 277,438 - +0.1 277,576 - +0.0 277,576 - +0.4 277,644 + GFF3911 0.14 -0.4 277,644 + GFF3911 0.14 -0.2 277,645 - GFF3911 0.14 -0.3 277,647 - GFF3911 0.14 -0.5 277,649 - GFF3911 0.14 +1.4 278,128 - GFF3911 0.44 +0.0 278,459 + GFF3911 0.65 +0.4 278,506 - GFF3911 0.68 -1.5 278,506 - GFF3911 0.68 -0.2 278,506 - GFF3911 0.68 -0.0 278,521 - GFF3911 0.69 +0.1 278,521 - GFF3911 0.69 -0.5 278,873 - -0.6 278,873 - -0.4 278,922 + +1.9 279,076 - -1.3 279,222 + +0.2 279,223 - -0.6 279,301 - GFF3912 0.18 +0.7 279,301 - GFF3912 0.18 -0.4 279,345 + GFF3912 0.23 -0.3 279,346 - GFF3912 0.23 -0.3 279,346 - GFF3912 0.23 +0.1 279,381 + GFF3912 0.28 +0.6 279,381 + GFF3912 0.28 +0.7 279,382 - GFF3912 0.28 +1.0 279,382 - GFF3912 0.28 -0.1 279,382 - GFF3912 0.28 +1.0 279,382 - GFF3912 0.28 +0.2 279,513 + GFF3912 0.43 -0.5 279,543 + GFF3912 0.47 -0.4 279,549 + GFF3912 0.48 +1.2 279,549 + GFF3912 0.48 -0.1 279,550 - GFF3912 0.48 +0.3 279,588 + GFF3912 0.52 -0.8 279,750 + GFF3912 0.72 +0.4 279,750 + GFF3912 0.72 +0.4 279,879 + GFF3912 0.87 -0.6 279,880 - GFF3912 0.87 -0.9 279,880 - GFF3912 0.87 +0.3 279,880 - GFF3912 0.87 +0.3 279,886 - GFF3912 0.88 -0.1 279,886 - GFF3912 0.88 +0.7
Or see this region's nucleotide sequence