Strain Fitness in Xanthobacter sp. DMC5 around GFF3882

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3880 and GFF3881 are separated by 104 nucleotidesGFF3881 and GFF3882 overlap by 4 nucleotidesGFF3882 and GFF3883 are separated by 2 nucleotidesGFF3883 and GFF3884 are separated by 29 nucleotides GFF3880 - hypothetical protein, at 247,480 to 248,466 GFF3880 GFF3881 - N-(5'-phosphoribosyl)anthranilate isomerase, at 248,571 to 249,338 GFF3881 GFF3882 - Tryptophan synthase beta chain, at 249,335 to 250,552 GFF3882 GFF3883 - hypothetical protein, at 250,555 to 250,896 GFF3883 GFF3884 - Tryptophan synthase alpha chain, at 250,926 to 251,753 GFF3884 Position (kb) 249 250 251Strain fitness (log2 ratio) -1 0 1at 248.417 kb on - strandat 248.417 kb on - strandat 248.417 kb on - strandat 248.417 kb on - strandat 250.527 kb on + strandat 250.666 kb on + strand, within GFF3883at 250.894 kb on + strandat 250.894 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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248,417 - -0.6
248,417 - +1.2
248,417 - +1.7
248,417 - -0.7
250,527 + -0.3
250,666 + GFF3883 0.32 -0.3
250,894 + -0.1
250,894 + -0.4

Or see this region's nucleotide sequence