Strain Fitness in Xanthobacter sp. DMC5 around GFF3810

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3808 and GFF3809 overlap by 29 nucleotidesGFF3809 and GFF3810 overlap by 4 nucleotidesGFF3810 and GFF3811 are separated by 137 nucleotides GFF3808 - hypothetical protein, at 167,049 to 167,591 GFF3808 GFF3809 - hypothetical protein, at 167,563 to 168,456 GFF3809 GFF3810 - hypothetical protein, at 168,453 to 169,067 GFF3810 GFF3811 - hypothetical protein, at 169,205 to 170,053 GFF3811 Position (kb) 168 169 170Strain fitness (log2 ratio) -1 0 1at 167.463 kb on + strand, within GFF3808at 167.464 kb on - strand, within GFF3808at 167.464 kb on - strand, within GFF3808at 167.478 kb on + strand, within GFF3808at 167.478 kb on + strand, within GFF3808at 167.478 kb on + strand, within GFF3808at 167.478 kb on + strand, within GFF3808at 167.479 kb on - strand, within GFF3808at 167.479 kb on - strand, within GFF3808at 167.479 kb on - strand, within GFF3808at 167.485 kb on - strand, within GFF3808at 167.824 kb on + strand, within GFF3809at 167.825 kb on - strand, within GFF3809at 167.825 kb on - strand, within GFF3809at 167.825 kb on - strand, within GFF3809at 167.825 kb on - strand, within GFF3809at 168.096 kb on + strand, within GFF3809at 168.096 kb on + strand, within GFF3809at 168.096 kb on + strand, within GFF3809at 168.096 kb on + strand, within GFF3809at 168.097 kb on - strand, within GFF3809at 168.097 kb on - strand, within GFF3809at 168.097 kb on - strand, within GFF3809at 168.097 kb on - strand, within GFF3809at 168.097 kb on - strand, within GFF3809at 168.097 kb on - strand, within GFF3809at 168.100 kb on + strand, within GFF3809at 168.101 kb on - strand, within GFF3809at 168.124 kb on + strand, within GFF3809at 168.124 kb on + strand, within GFF3809at 168.125 kb on - strand, within GFF3809at 168.846 kb on - strand, within GFF3810at 168.861 kb on + strand, within GFF3810at 168.862 kb on - strand, within GFF3810at 168.862 kb on - strand, within GFF3810at 168.975 kb on + strand, within GFF3810at 168.976 kb on - strand, within GFF3810at 168.981 kb on + strand, within GFF3810at 168.982 kb on - strand, within GFF3810at 169.216 kb on - strandat 169.617 kb on - strand, within GFF3811at 169.676 kb on + strand, within GFF3811at 169.677 kb on - strand, within GFF3811at 169.677 kb on - strand, within GFF3811at 169.854 kb on - strand, within GFF3811at 169.949 kb on - strand, within GFF3811at 169.949 kb on - strand, within GFF3811at 170.067 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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167,463 + GFF3808 0.76 +0.7
167,464 - GFF3808 0.76 +1.4
167,464 - GFF3808 0.76 +0.4
167,478 + GFF3808 0.79 -0.2
167,478 + GFF3808 0.79 -0.6
167,478 + GFF3808 0.79 -0.2
167,478 + GFF3808 0.79 +0.1
167,479 - GFF3808 0.79 +0.2
167,479 - GFF3808 0.79 +0.5
167,479 - GFF3808 0.79 -0.6
167,485 - GFF3808 0.80 +0.5
167,824 + GFF3809 0.29 +0.3
167,825 - GFF3809 0.29 -0.7
167,825 - GFF3809 0.29 +0.4
167,825 - GFF3809 0.29 +0.8
167,825 - GFF3809 0.29 +0.6
168,096 + GFF3809 0.60 +0.9
168,096 + GFF3809 0.60 -0.1
168,096 + GFF3809 0.60 -0.9
168,096 + GFF3809 0.60 +0.9
168,097 - GFF3809 0.60 -0.5
168,097 - GFF3809 0.60 +0.2
168,097 - GFF3809 0.60 +0.7
168,097 - GFF3809 0.60 -0.6
168,097 - GFF3809 0.60 -1.1
168,097 - GFF3809 0.60 +0.3
168,100 + GFF3809 0.60 +0.9
168,101 - GFF3809 0.60 +0.7
168,124 + GFF3809 0.63 +0.2
168,124 + GFF3809 0.63 +0.6
168,125 - GFF3809 0.63 +0.3
168,846 - GFF3810 0.64 +0.2
168,861 + GFF3810 0.66 +0.4
168,862 - GFF3810 0.67 -0.5
168,862 - GFF3810 0.67 -0.1
168,975 + GFF3810 0.85 +0.9
168,976 - GFF3810 0.85 -0.5
168,981 + GFF3810 0.86 +0.1
168,982 - GFF3810 0.86 -0.6
169,216 - -0.2
169,617 - GFF3811 0.49 +0.3
169,676 + GFF3811 0.55 -0.6
169,677 - GFF3811 0.56 +0.3
169,677 - GFF3811 0.56 +0.1
169,854 - GFF3811 0.76 -0.8
169,949 - GFF3811 0.88 -0.2
169,949 - GFF3811 0.88 -0.3
170,067 - -0.4

Or see this region's nucleotide sequence