Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3796 and GFF3797 are separated by 22 nucleotides GFF3797 and GFF3798 are separated by 181 nucleotides
GFF3796 - Lipopolysaccharide export system ATP-binding protein LptB, at 152,244 to 153,092
GFF3796
GFF3797 - Long-chain-fatty-acid--CoA ligase FadD15, at 153,115 to 155,064
GFF3797
GFF3798 - High-affinity branched-chain amino acid transport system permease protein LivH, at 155,246 to 156,139
GFF3798
Position (kb) 153
154
155
156 Strain fitness (log2 ratio) -2
-1
0
1
2 at 152.189 kb on + strand at 152.196 kb on + strand at 152.206 kb on + strand at 152.207 kb on - strand at 152.207 kb on - strand at 152.207 kb on - strand at 152.251 kb on + strand at 152.709 kb on - strand, within GFF3796 at 152.748 kb on + strand, within GFF3796 at 152.748 kb on + strand, within GFF3796 at 152.748 kb on + strand, within GFF3796 at 152.748 kb on + strand, within GFF3796 at 152.865 kb on + strand, within GFF3796 at 152.865 kb on + strand, within GFF3796 at 152.865 kb on + strand, within GFF3796 at 152.865 kb on + strand, within GFF3796 at 153.033 kb on + strand at 153.033 kb on + strand at 153.244 kb on + strand at 153.244 kb on + strand at 153.244 kb on + strand at 153.245 kb on - strand at 153.245 kb on - strand at 153.409 kb on + strand, within GFF3797 at 153.409 kb on + strand, within GFF3797 at 153.409 kb on + strand, within GFF3797 at 153.409 kb on + strand, within GFF3797 at 153.410 kb on - strand, within GFF3797 at 153.439 kb on + strand, within GFF3797 at 153.439 kb on + strand, within GFF3797 at 153.439 kb on + strand, within GFF3797 at 153.440 kb on - strand, within GFF3797 at 153.440 kb on - strand, within GFF3797 at 153.440 kb on - strand, within GFF3797 at 153.440 kb on - strand, within GFF3797 at 153.440 kb on - strand, within GFF3797 at 153.440 kb on - strand, within GFF3797 at 153.451 kb on + strand, within GFF3797 at 153.451 kb on + strand, within GFF3797 at 153.451 kb on + strand, within GFF3797 at 153.452 kb on - strand, within GFF3797 at 153.452 kb on - strand, within GFF3797 at 153.452 kb on - strand, within GFF3797 at 153.452 kb on - strand, within GFF3797 at 153.452 kb on - strand, within GFF3797 at 153.547 kb on + strand, within GFF3797 at 153.548 kb on - strand, within GFF3797 at 153.652 kb on + strand, within GFF3797 at 153.652 kb on + strand, within GFF3797 at 153.653 kb on - strand, within GFF3797 at 153.814 kb on + strand, within GFF3797 at 153.814 kb on + strand, within GFF3797 at 153.814 kb on + strand, within GFF3797 at 153.815 kb on - strand, within GFF3797 at 153.815 kb on - strand, within GFF3797 at 153.815 kb on - strand, within GFF3797 at 153.856 kb on + strand, within GFF3797 at 153.857 kb on - strand, within GFF3797 at 154.241 kb on - strand, within GFF3797 at 154.564 kb on + strand, within GFF3797 at 154.564 kb on + strand, within GFF3797 at 154.565 kb on - strand, within GFF3797 at 154.565 kb on - strand, within GFF3797 at 154.565 kb on - strand, within GFF3797 at 154.566 kb on + strand, within GFF3797 at 154.566 kb on + strand, within GFF3797 at 154.566 kb on + strand, within GFF3797 at 154.567 kb on - strand, within GFF3797 at 154.595 kb on - strand, within GFF3797 at 154.712 kb on - strand, within GFF3797 at 154.712 kb on - strand, within GFF3797 at 154.713 kb on + strand, within GFF3797 at 154.713 kb on + strand, within GFF3797 at 154.822 kb on + strand, within GFF3797 at 154.822 kb on + strand, within GFF3797 at 154.822 kb on + strand, within GFF3797 at 154.823 kb on - strand, within GFF3797 at 154.823 kb on - strand, within GFF3797 at 154.910 kb on + strand at 154.910 kb on + strand at 154.910 kb on + strand at 154.911 kb on - strand at 154.911 kb on - strand at 154.911 kb on - strand at 154.911 kb on - strand at 154.921 kb on + strand at 154.921 kb on + strand at 154.921 kb on + strand at 154.922 kb on - strand at 154.922 kb on - strand at 154.922 kb on - strand at 154.922 kb on - strand at 154.922 kb on - strand at 154.922 kb on - strand at 154.922 kb on - strand at 155.140 kb on + strand at 155.180 kb on - strand at 155.180 kb on - strand at 155.225 kb on - strand at 155.278 kb on - strand at 155.303 kb on + strand at 155.304 kb on - strand at 155.336 kb on + strand, within GFF3798 at 155.337 kb on - strand, within GFF3798 at 155.532 kb on - strand, within GFF3798 at 155.672 kb on + strand, within GFF3798 at 155.672 kb on + strand, within GFF3798 at 155.672 kb on + strand, within GFF3798 at 155.672 kb on + strand, within GFF3798 at 155.672 kb on + strand, within GFF3798 at 155.673 kb on - strand, within GFF3798 at 155.673 kb on - strand, within GFF3798 at 155.673 kb on - strand, within GFF3798 at 155.673 kb on - strand, within GFF3798 at 155.729 kb on - strand, within GFF3798 at 155.732 kb on + strand, within GFF3798 at 155.907 kb on - strand, within GFF3798 at 155.907 kb on - strand, within GFF3798 at 155.907 kb on - strand, within GFF3798 at 155.907 kb on - strand, within GFF3798 at 156.014 kb on + strand, within GFF3798 at 156.014 kb on + strand, within GFF3798 at 156.015 kb on - strand, within GFF3798 at 156.029 kb on + strand, within GFF3798 at 156.030 kb on - strand, within GFF3798 at 156.051 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 152,189 + +0.3 152,196 + -0.7 152,206 + +0.6 152,207 - +0.7 152,207 - +0.0 152,207 - -0.1 152,251 + +0.5 152,709 - GFF3796 0.55 +1.0 152,748 + GFF3796 0.59 +0.1 152,748 + GFF3796 0.59 +0.5 152,748 + GFF3796 0.59 +0.4 152,748 + GFF3796 0.59 +0.6 152,865 + GFF3796 0.73 -0.5 152,865 + GFF3796 0.73 +1.0 152,865 + GFF3796 0.73 +0.2 152,865 + GFF3796 0.73 -1.8 153,033 + +0.7 153,033 + +0.2 153,244 + +0.5 153,244 + -0.1 153,244 + -0.3 153,245 - +0.3 153,245 - +0.0 153,409 + GFF3797 0.15 -0.2 153,409 + GFF3797 0.15 +0.4 153,409 + GFF3797 0.15 +1.4 153,409 + GFF3797 0.15 +0.1 153,410 - GFF3797 0.15 +0.1 153,439 + GFF3797 0.17 -0.3 153,439 + GFF3797 0.17 -0.2 153,439 + GFF3797 0.17 -0.0 153,440 - GFF3797 0.17 -0.8 153,440 - GFF3797 0.17 +0.9 153,440 - GFF3797 0.17 -1.1 153,440 - GFF3797 0.17 -0.7 153,440 - GFF3797 0.17 +0.1 153,440 - GFF3797 0.17 -0.1 153,451 + GFF3797 0.17 -0.4 153,451 + GFF3797 0.17 -0.1 153,451 + GFF3797 0.17 -0.0 153,452 - GFF3797 0.17 -0.3 153,452 - GFF3797 0.17 -0.4 153,452 - GFF3797 0.17 +0.1 153,452 - GFF3797 0.17 -2.0 153,452 - GFF3797 0.17 -0.1 153,547 + GFF3797 0.22 -1.9 153,548 - GFF3797 0.22 +0.2 153,652 + GFF3797 0.28 +0.4 153,652 + GFF3797 0.28 -0.5 153,653 - GFF3797 0.28 +0.0 153,814 + GFF3797 0.36 -0.6 153,814 + GFF3797 0.36 -1.3 153,814 + GFF3797 0.36 +0.7 153,815 - GFF3797 0.36 -0.1 153,815 - GFF3797 0.36 +0.2 153,815 - GFF3797 0.36 +0.1 153,856 + GFF3797 0.38 -0.3 153,857 - GFF3797 0.38 -1.4 154,241 - GFF3797 0.58 +0.1 154,564 + GFF3797 0.74 -0.2 154,564 + GFF3797 0.74 +1.9 154,565 - GFF3797 0.74 +1.1 154,565 - GFF3797 0.74 +1.0 154,565 - GFF3797 0.74 -0.3 154,566 + GFF3797 0.74 +0.1 154,566 + GFF3797 0.74 -0.5 154,566 + GFF3797 0.74 -0.8 154,567 - GFF3797 0.74 +0.1 154,595 - GFF3797 0.76 -0.3 154,712 - GFF3797 0.82 -0.7 154,712 - GFF3797 0.82 -0.5 154,713 + GFF3797 0.82 +0.1 154,713 + GFF3797 0.82 -0.8 154,822 + GFF3797 0.88 +0.4 154,822 + GFF3797 0.88 -0.3 154,822 + GFF3797 0.88 +0.1 154,823 - GFF3797 0.88 +0.2 154,823 - GFF3797 0.88 +0.6 154,910 + +0.1 154,910 + +0.4 154,910 + +0.5 154,911 - -0.5 154,911 - +0.3 154,911 - +0.3 154,911 - +0.3 154,921 + +0.2 154,921 + -0.0 154,921 + -0.7 154,922 - +0.4 154,922 - +0.5 154,922 - -0.0 154,922 - -0.1 154,922 - -1.1 154,922 - +0.1 154,922 - -0.4 155,140 + -0.2 155,180 - +0.0 155,180 - -0.6 155,225 - +0.2 155,278 - -0.3 155,303 + -0.0 155,304 - -1.5 155,336 + GFF3798 0.10 -0.4 155,337 - GFF3798 0.10 -0.1 155,532 - GFF3798 0.32 -0.3 155,672 + GFF3798 0.48 -1.1 155,672 + GFF3798 0.48 -1.4 155,672 + GFF3798 0.48 -0.8 155,672 + GFF3798 0.48 +0.5 155,672 + GFF3798 0.48 +1.1 155,673 - GFF3798 0.48 +0.3 155,673 - GFF3798 0.48 -0.0 155,673 - GFF3798 0.48 -0.8 155,673 - GFF3798 0.48 -0.9 155,729 - GFF3798 0.54 -0.6 155,732 + GFF3798 0.54 +0.6 155,907 - GFF3798 0.74 -0.1 155,907 - GFF3798 0.74 -0.2 155,907 - GFF3798 0.74 +0.1 155,907 - GFF3798 0.74 -1.4 156,014 + GFF3798 0.86 +0.6 156,014 + GFF3798 0.86 +0.9 156,015 - GFF3798 0.86 +0.9 156,029 + GFF3798 0.88 -0.4 156,030 - GFF3798 0.88 -0.1 156,051 - -0.3
Or see this region's nucleotide sequence