Strain Fitness in Xanthobacter sp. DMC5 around GFF3708

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3706 and GFF3707 overlap by 20 nucleotidesGFF3707 and GFF3708 overlap by 4 nucleotidesGFF3708 and GFF3709 overlap by 4 nucleotidesGFF3709 and GFF3710 are separated by 1 nucleotides GFF3706 - hypothetical protein, at 49,696 to 50,049 GFF3706 GFF3707 - hypothetical protein, at 50,030 to 50,749 GFF3707 GFF3708 - PqqA peptide cyclase, at 50,746 to 51,927 GFF3708 GFF3709 - Bifunctional coenzyme PQQ synthesis protein C/D, at 51,924 to 52,199 GFF3709 GFF3710 - Bifunctional coenzyme PQQ synthesis protein C/D, at 52,201 to 53,022 GFF3710 Position (kb) 50 51 52Strain fitness (log2 ratio) -1 0 1 2at 49.782 kb on + strand, within GFF3706at 49.782 kb on + strand, within GFF3706at 49.783 kb on - strand, within GFF3706at 49.783 kb on - strand, within GFF3706at 49.838 kb on + strand, within GFF3706at 49.838 kb on + strand, within GFF3706at 49.838 kb on + strand, within GFF3706at 49.839 kb on - strand, within GFF3706at 49.940 kb on + strand, within GFF3706at 49.940 kb on + strand, within GFF3706at 50.050 kb on - strandat 50.146 kb on + strand, within GFF3707at 50.146 kb on + strand, within GFF3707at 50.147 kb on - strand, within GFF3707at 50.148 kb on + strand, within GFF3707at 50.149 kb on - strand, within GFF3707at 50.149 kb on - strand, within GFF3707at 50.149 kb on - strand, within GFF3707at 50.149 kb on - strand, within GFF3707at 50.446 kb on + strand, within GFF3707at 50.446 kb on + strand, within GFF3707at 50.547 kb on + strand, within GFF3707at 50.548 kb on - strand, within GFF3707at 50.553 kb on + strand, within GFF3707at 50.553 kb on + strand, within GFF3707at 50.553 kb on + strand, within GFF3707at 50.553 kb on + strand, within GFF3707at 50.554 kb on - strand, within GFF3707at 50.798 kb on + strandat 50.799 kb on - strandat 50.804 kb on + strandat 50.804 kb on + strandat 50.805 kb on - strandat 51.176 kb on + strand, within GFF3708at 51.177 kb on - strand, within GFF3708at 51.180 kb on - strand, within GFF3708at 51.299 kb on + strand, within GFF3708at 51.311 kb on + strand, within GFF3708at 51.311 kb on + strand, within GFF3708at 51.311 kb on + strand, within GFF3708at 51.312 kb on - strand, within GFF3708at 51.485 kb on + strand, within GFF3708at 51.617 kb on + strand, within GFF3708at 51.618 kb on - strand, within GFF3708at 51.618 kb on - strand, within GFF3708at 51.798 kb on - strand, within GFF3708at 52.006 kb on + strand, within GFF3709at 52.007 kb on - strand, within GFF3709at 52.265 kb on + strandat 52.266 kb on - strandat 52.274 kb on + strandat 52.275 kb on - strandat 52.313 kb on + strand, within GFF3710at 52.373 kb on + strand, within GFF3710at 52.373 kb on + strand, within GFF3710at 52.427 kb on + strand, within GFF3710at 52.428 kb on - strand, within GFF3710at 52.440 kb on - strand, within GFF3710at 52.457 kb on + strand, within GFF3710at 52.457 kb on + strand, within GFF3710at 52.458 kb on - strand, within GFF3710at 52.479 kb on + strand, within GFF3710at 52.479 kb on + strand, within GFF3710at 52.568 kb on + strand, within GFF3710at 52.568 kb on + strand, within GFF3710at 52.568 kb on + strand, within GFF3710at 52.568 kb on + strand, within GFF3710at 52.622 kb on + strand, within GFF3710at 52.622 kb on + strand, within GFF3710at 52.623 kb on - strand, within GFF3710at 52.794 kb on - strand, within GFF3710at 52.860 kb on + strand, within GFF3710at 52.861 kb on - strand, within GFF3710at 52.861 kb on - strand, within GFF3710

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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49,782 + GFF3706 0.24 +1.1
49,782 + GFF3706 0.24 -0.7
49,783 - GFF3706 0.25 +0.8
49,783 - GFF3706 0.25 +1.0
49,838 + GFF3706 0.40 +1.0
49,838 + GFF3706 0.40 -0.9
49,838 + GFF3706 0.40 -0.1
49,839 - GFF3706 0.40 +1.4
49,940 + GFF3706 0.69 +0.4
49,940 + GFF3706 0.69 +0.6
50,050 - +1.4
50,146 + GFF3707 0.16 +0.4
50,146 + GFF3707 0.16 -0.3
50,147 - GFF3707 0.16 -1.2
50,148 + GFF3707 0.16 +0.4
50,149 - GFF3707 0.17 -1.0
50,149 - GFF3707 0.17 -0.5
50,149 - GFF3707 0.17 -0.2
50,149 - GFF3707 0.17 +0.6
50,446 + GFF3707 0.58 -0.1
50,446 + GFF3707 0.58 -0.1
50,547 + GFF3707 0.72 -0.1
50,548 - GFF3707 0.72 -1.6
50,553 + GFF3707 0.73 -0.2
50,553 + GFF3707 0.73 -0.9
50,553 + GFF3707 0.73 -0.2
50,553 + GFF3707 0.73 -0.5
50,554 - GFF3707 0.73 -1.5
50,798 + -0.5
50,799 - +1.1
50,804 + +0.7
50,804 + -0.6
50,805 - -1.0
51,176 + GFF3708 0.36 +0.1
51,177 - GFF3708 0.36 -0.8
51,180 - GFF3708 0.37 -0.7
51,299 + GFF3708 0.47 -0.0
51,311 + GFF3708 0.48 +2.2
51,311 + GFF3708 0.48 +1.6
51,311 + GFF3708 0.48 -0.5
51,312 - GFF3708 0.48 +0.5
51,485 + GFF3708 0.63 +0.9
51,617 + GFF3708 0.74 +0.4
51,618 - GFF3708 0.74 +0.4
51,618 - GFF3708 0.74 -0.4
51,798 - GFF3708 0.89 -0.3
52,006 + GFF3709 0.30 +0.2
52,007 - GFF3709 0.30 -0.2
52,265 + -1.0
52,266 - +0.4
52,274 + +0.2
52,275 - +0.1
52,313 + GFF3710 0.14 +0.7
52,373 + GFF3710 0.21 -0.2
52,373 + GFF3710 0.21 -0.6
52,427 + GFF3710 0.27 -0.1
52,428 - GFF3710 0.28 +1.2
52,440 - GFF3710 0.29 +1.9
52,457 + GFF3710 0.31 -0.3
52,457 + GFF3710 0.31 +0.0
52,458 - GFF3710 0.31 +0.6
52,479 + GFF3710 0.34 +0.0
52,479 + GFF3710 0.34 -0.8
52,568 + GFF3710 0.45 -0.4
52,568 + GFF3710 0.45 -0.6
52,568 + GFF3710 0.45 -0.1
52,568 + GFF3710 0.45 -0.5
52,622 + GFF3710 0.51 -0.3
52,622 + GFF3710 0.51 +1.3
52,623 - GFF3710 0.51 +0.0
52,794 - GFF3710 0.72 +1.1
52,860 + GFF3710 0.80 +0.6
52,861 - GFF3710 0.80 -0.6
52,861 - GFF3710 0.80 -0.0

Or see this region's nucleotide sequence