Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF359 and GFF360 are separated by 131 nucleotides GFF360 and GFF361 are separated by 6 nucleotides
GFF359 - hypothetical protein, at 369,124 to 371,043
GFF359
GFF360 - hypothetical protein, at 371,175 to 372,896
GFF360
GFF361 - Iron uptake protein A2, at 372,903 to 373,928
GFF361
Position (kb) 371
372
373 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 371.049 kb on + strand at 371.050 kb on - strand at 371.311 kb on + strand at 371.311 kb on + strand at 371.312 kb on - strand at 371.312 kb on - strand at 371.335 kb on + strand at 371.623 kb on - strand, within GFF360 at 371.623 kb on - strand, within GFF360 at 371.623 kb on - strand, within GFF360 at 371.623 kb on - strand, within GFF360 at 372.169 kb on + strand, within GFF360 at 372.169 kb on + strand, within GFF360 at 372.170 kb on - strand, within GFF360 at 372.391 kb on + strand, within GFF360 at 372.392 kb on - strand, within GFF360 at 372.441 kb on + strand, within GFF360 at 372.441 kb on + strand, within GFF360 at 372.442 kb on - strand, within GFF360 at 372.442 kb on - strand, within GFF360 at 372.442 kb on - strand, within GFF360 at 372.442 kb on - strand, within GFF360 at 372.535 kb on + strand, within GFF360 at 372.536 kb on - strand, within GFF360 at 372.536 kb on - strand, within GFF360 at 372.553 kb on + strand, within GFF360 at 372.553 kb on + strand, within GFF360 at 372.554 kb on - strand, within GFF360 at 372.554 kb on - strand, within GFF360 at 372.554 kb on - strand, within GFF360 at 373.066 kb on + strand, within GFF361 at 373.066 kb on + strand, within GFF361 at 373.066 kb on + strand, within GFF361 at 373.066 kb on + strand, within GFF361 at 373.066 kb on + strand, within GFF361 at 373.067 kb on - strand, within GFF361 at 373.067 kb on - strand, within GFF361 at 373.267 kb on + strand, within GFF361 at 373.268 kb on - strand, within GFF361 at 373.268 kb on - strand, within GFF361 at 373.268 kb on - strand, within GFF361 at 373.268 kb on - strand, within GFF361 at 373.268 kb on - strand, within GFF361 at 373.268 kb on - strand, within GFF361 at 373.270 kb on + strand, within GFF361 at 373.271 kb on - strand, within GFF361 at 373.271 kb on - strand, within GFF361 at 373.414 kb on + strand, within GFF361 at 373.414 kb on + strand, within GFF361 at 373.414 kb on + strand, within GFF361 at 373.438 kb on + strand, within GFF361 at 373.439 kb on - strand, within GFF361 at 373.501 kb on + strand, within GFF361 at 373.502 kb on - strand, within GFF361 at 373.502 kb on - strand, within GFF361 at 373.570 kb on + strand, within GFF361 at 373.570 kb on + strand, within GFF361 at 373.835 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 371,049 + +0.4 371,050 - -0.1 371,311 + -0.1 371,311 + +0.3 371,312 - +0.7 371,312 - -0.1 371,335 + +1.0 371,623 - GFF360 0.26 +0.1 371,623 - GFF360 0.26 -0.8 371,623 - GFF360 0.26 -0.5 371,623 - GFF360 0.26 -0.2 372,169 + GFF360 0.58 -0.0 372,169 + GFF360 0.58 +1.1 372,170 - GFF360 0.58 -0.6 372,391 + GFF360 0.71 +0.1 372,392 - GFF360 0.71 -1.6 372,441 + GFF360 0.74 +0.0 372,441 + GFF360 0.74 +0.0 372,442 - GFF360 0.74 +0.5 372,442 - GFF360 0.74 -1.0 372,442 - GFF360 0.74 -3.1 372,442 - GFF360 0.74 +0.7 372,535 + GFF360 0.79 +0.3 372,536 - GFF360 0.79 -0.2 372,536 - GFF360 0.79 -0.2 372,553 + GFF360 0.80 -0.2 372,553 + GFF360 0.80 -0.0 372,554 - GFF360 0.80 -0.1 372,554 - GFF360 0.80 -0.7 372,554 - GFF360 0.80 -0.4 373,066 + GFF361 0.16 -0.6 373,066 + GFF361 0.16 -0.5 373,066 + GFF361 0.16 +0.2 373,066 + GFF361 0.16 -0.0 373,066 + GFF361 0.16 -1.0 373,067 - GFF361 0.16 -1.5 373,067 - GFF361 0.16 -0.3 373,267 + GFF361 0.35 -0.0 373,268 - GFF361 0.36 -0.2 373,268 - GFF361 0.36 -0.4 373,268 - GFF361 0.36 -0.7 373,268 - GFF361 0.36 -0.1 373,268 - GFF361 0.36 +0.8 373,268 - GFF361 0.36 +0.9 373,270 + GFF361 0.36 +0.0 373,271 - GFF361 0.36 +1.0 373,271 - GFF361 0.36 +0.6 373,414 + GFF361 0.50 -0.6 373,414 + GFF361 0.50 +0.8 373,414 + GFF361 0.50 -0.1 373,438 + GFF361 0.52 +0.2 373,439 - GFF361 0.52 -0.6 373,501 + GFF361 0.58 +1.4 373,502 - GFF361 0.58 +0.5 373,502 - GFF361 0.58 -0.6 373,570 + GFF361 0.65 +1.0 373,570 + GFF361 0.65 +0.5 373,835 - -0.7
Or see this region's nucleotide sequence