Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF35 and GFF36 are separated by 21 nucleotides GFF36 and GFF37 are separated by 33 nucleotides GFF37 and GFF38 are separated by 100 nucleotides
GFF35 - Acetophenone carboxylase delta subunit, at 42,644 to 44,338
GFF35
GFF36 - Acetophenone carboxylase gamma subunit, at 44,360 to 46,405
GFF36
GFF37 - 5-keto-4-deoxy-D-glucarate aldolase, at 46,439 to 47,182
GFF37
GFF38 - Inner membrane ABC transporter permease protein YdcV, at 47,283 to 48,077
GFF38
Position (kb) 44
45
46
47 Strain fitness (log2 ratio) -2
-1
0
1
2 at 43.458 kb on + strand, within GFF35 at 43.458 kb on + strand, within GFF35 at 43.459 kb on - strand, within GFF35 at 43.718 kb on - strand, within GFF35 at 43.722 kb on + strand, within GFF35 at 43.723 kb on - strand, within GFF35 at 43.723 kb on - strand, within GFF35 at 43.723 kb on - strand, within GFF35 at 43.821 kb on + strand, within GFF35 at 43.822 kb on - strand, within GFF35 at 43.822 kb on - strand, within GFF35 at 43.822 kb on - strand, within GFF35 at 43.923 kb on + strand, within GFF35 at 43.923 kb on + strand, within GFF35 at 43.926 kb on + strand, within GFF35 at 44.434 kb on - strand at 44.434 kb on - strand at 44.538 kb on + strand at 44.665 kb on - strand, within GFF36 at 44.778 kb on + strand, within GFF36 at 44.778 kb on + strand, within GFF36 at 44.921 kb on - strand, within GFF36 at 45.420 kb on - strand, within GFF36 at 45.685 kb on - strand, within GFF36 at 45.738 kb on + strand, within GFF36 at 45.739 kb on - strand, within GFF36 at 45.900 kb on + strand, within GFF36 at 45.900 kb on + strand, within GFF36 at 45.901 kb on - strand, within GFF36 at 46.033 kb on - strand, within GFF36 at 46.084 kb on - strand, within GFF36 at 46.084 kb on - strand, within GFF36 at 46.212 kb on + strand at 46.212 kb on + strand at 46.212 kb on + strand at 46.213 kb on - strand at 46.213 kb on - strand at 46.213 kb on - strand at 46.500 kb on + strand at 46.500 kb on + strand at 46.500 kb on + strand at 46.500 kb on + strand at 46.500 kb on + strand at 46.501 kb on - strand at 46.501 kb on - strand at 46.501 kb on - strand at 46.656 kb on + strand, within GFF37 at 46.657 kb on - strand, within GFF37 at 46.809 kb on + strand, within GFF37 at 46.810 kb on - strand, within GFF37 at 46.831 kb on - strand, within GFF37 at 46.878 kb on + strand, within GFF37 at 46.878 kb on + strand, within GFF37 at 47.004 kb on + strand, within GFF37 at 47.004 kb on + strand, within GFF37
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 43,458 + GFF35 0.48 -0.7 43,458 + GFF35 0.48 -0.5 43,459 - GFF35 0.48 +0.6 43,718 - GFF35 0.63 -0.1 43,722 + GFF35 0.64 +0.4 43,723 - GFF35 0.64 -0.0 43,723 - GFF35 0.64 +0.4 43,723 - GFF35 0.64 +0.1 43,821 + GFF35 0.69 +0.5 43,822 - GFF35 0.69 -0.1 43,822 - GFF35 0.69 -0.1 43,822 - GFF35 0.69 +0.8 43,923 + GFF35 0.75 +0.0 43,923 + GFF35 0.75 +0.6 43,926 + GFF35 0.76 +0.4 44,434 - -0.1 44,434 - -0.2 44,538 + -1.0 44,665 - GFF36 0.15 +0.3 44,778 + GFF36 0.20 +0.6 44,778 + GFF36 0.20 +0.2 44,921 - GFF36 0.27 +1.8 45,420 - GFF36 0.52 -0.0 45,685 - GFF36 0.65 +0.4 45,738 + GFF36 0.67 +0.1 45,739 - GFF36 0.67 +0.7 45,900 + GFF36 0.75 -0.7 45,900 + GFF36 0.75 -0.4 45,901 - GFF36 0.75 -0.2 46,033 - GFF36 0.82 -0.4 46,084 - GFF36 0.84 -0.6 46,084 - GFF36 0.84 -1.0 46,212 + -1.0 46,212 + -0.1 46,212 + -0.2 46,213 - -1.4 46,213 - -0.0 46,213 - +0.4 46,500 + +0.3 46,500 + +0.5 46,500 + -0.2 46,500 + -0.5 46,500 + -0.5 46,501 - +0.4 46,501 - -0.3 46,501 - -0.2 46,656 + GFF37 0.29 +1.0 46,657 - GFF37 0.29 +0.0 46,809 + GFF37 0.50 -1.9 46,810 - GFF37 0.50 +0.2 46,831 - GFF37 0.53 +0.2 46,878 + GFF37 0.59 -0.2 46,878 + GFF37 0.59 +0.0 47,004 + GFF37 0.76 +0.5 47,004 + GFF37 0.76 +0.6
Or see this region's nucleotide sequence