Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3538 and GFF3539 are separated by 72 nucleotides GFF3539 and GFF3540 are separated by 57 nucleotides
GFF3538 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 393,004 to 394,293
GFF3538
GFF3539 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 394,366 to 394,896
GFF3539
GFF3540 - hypothetical protein, at 394,954 to 396,165
GFF3540
Position (kb) 394
395 Strain fitness (log2 ratio) -1
0
1
2 at 394.586 kb on - strand, within GFF3539 at 394.724 kb on - strand, within GFF3539 at 394.807 kb on + strand, within GFF3539 at 394.808 kb on - strand, within GFF3539 at 394.861 kb on + strand at 394.862 kb on - strand at 394.885 kb on - strand at 395.191 kb on + strand, within GFF3540 at 395.342 kb on + strand, within GFF3540 at 395.342 kb on + strand, within GFF3540 at 395.360 kb on - strand, within GFF3540 at 395.360 kb on - strand, within GFF3540 at 395.360 kb on - strand, within GFF3540 at 395.734 kb on + strand, within GFF3540 at 395.734 kb on + strand, within GFF3540 at 395.734 kb on + strand, within GFF3540 at 395.734 kb on + strand, within GFF3540 at 395.734 kb on + strand, within GFF3540 at 395.735 kb on - strand, within GFF3540 at 395.809 kb on - strand, within GFF3540 at 395.815 kb on + strand, within GFF3540 at 395.815 kb on + strand, within GFF3540 at 395.815 kb on + strand, within GFF3540 at 395.815 kb on + strand, within GFF3540 at 395.815 kb on + strand, within GFF3540
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 394,586 - GFF3539 0.41 -0.4 394,724 - GFF3539 0.67 -0.6 394,807 + GFF3539 0.83 +0.9 394,808 - GFF3539 0.83 -0.6 394,861 + +0.5 394,862 - +1.9 394,885 - +0.8 395,191 + GFF3540 0.20 -0.6 395,342 + GFF3540 0.32 -1.3 395,342 + GFF3540 0.32 +0.2 395,360 - GFF3540 0.33 -1.0 395,360 - GFF3540 0.33 +0.6 395,360 - GFF3540 0.33 +1.6 395,734 + GFF3540 0.64 +0.1 395,734 + GFF3540 0.64 +0.6 395,734 + GFF3540 0.64 -1.3 395,734 + GFF3540 0.64 +0.3 395,734 + GFF3540 0.64 -0.5 395,735 - GFF3540 0.64 +1.2 395,809 - GFF3540 0.71 +1.2 395,815 + GFF3540 0.71 +0.6 395,815 + GFF3540 0.71 -0.6 395,815 + GFF3540 0.71 -0.1 395,815 + GFF3540 0.71 +0.6 395,815 + GFF3540 0.71 -0.2
Or see this region's nucleotide sequence