Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3529 and GFF3530 are separated by 303 nucleotides GFF3530 and GFF3531 are separated by 66 nucleotides
GFF3529 - Aspartate--tRNA(Asp/Asn) ligase, at 382,011 to 383,786
GFF3529
GFF3530 - hypothetical protein, at 384,090 to 386,393
GFF3530
GFF3531 - Ribonuclease D, at 386,460 to 387,608
GFF3531
Position (kb) 384
385
386
387 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 383.947 kb on - strand at 384.005 kb on + strand at 384.005 kb on + strand at 384.006 kb on - strand at 384.006 kb on - strand at 384.006 kb on - strand at 384.006 kb on - strand at 384.006 kb on - strand at 384.020 kb on + strand at 384.020 kb on + strand at 384.020 kb on + strand at 384.020 kb on + strand at 384.020 kb on + strand at 384.021 kb on - strand at 384.021 kb on - strand at 384.021 kb on - strand at 384.145 kb on + strand at 384.146 kb on - strand at 384.436 kb on + strand, within GFF3530 at 384.507 kb on + strand, within GFF3530 at 384.507 kb on + strand, within GFF3530 at 384.546 kb on + strand, within GFF3530 at 384.547 kb on - strand, within GFF3530 at 384.547 kb on - strand, within GFF3530 at 384.633 kb on + strand, within GFF3530 at 384.634 kb on - strand, within GFF3530 at 384.705 kb on + strand, within GFF3530 at 384.706 kb on - strand, within GFF3530 at 384.706 kb on - strand, within GFF3530 at 384.721 kb on - strand, within GFF3530 at 385.227 kb on + strand, within GFF3530 at 385.227 kb on + strand, within GFF3530 at 385.228 kb on - strand, within GFF3530 at 385.243 kb on - strand, within GFF3530 at 385.314 kb on - strand, within GFF3530 at 385.695 kb on + strand, within GFF3530 at 386.109 kb on + strand, within GFF3530 at 386.221 kb on + strand at 386.329 kb on - strand at 386.690 kb on - strand, within GFF3531 at 386.808 kb on + strand, within GFF3531 at 386.907 kb on + strand, within GFF3531 at 386.943 kb on + strand, within GFF3531 at 386.944 kb on - strand, within GFF3531 at 386.944 kb on - strand, within GFF3531
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 383,947 - +1.2 384,005 + +0.3 384,005 + +0.3 384,006 - -0.9 384,006 - -1.2 384,006 - -0.1 384,006 - -0.0 384,006 - -3.1 384,020 + +0.6 384,020 + +0.5 384,020 + +0.8 384,020 + +0.6 384,020 + -0.1 384,021 - -0.3 384,021 - -1.2 384,021 - +0.1 384,145 + -1.4 384,146 - +0.6 384,436 + GFF3530 0.15 +0.6 384,507 + GFF3530 0.18 +0.9 384,507 + GFF3530 0.18 +0.8 384,546 + GFF3530 0.20 -0.3 384,547 - GFF3530 0.20 -0.5 384,547 - GFF3530 0.20 +0.6 384,633 + GFF3530 0.24 +0.2 384,634 - GFF3530 0.24 +0.1 384,705 + GFF3530 0.27 -0.1 384,706 - GFF3530 0.27 +0.2 384,706 - GFF3530 0.27 +0.4 384,721 - GFF3530 0.27 +0.5 385,227 + GFF3530 0.49 +0.5 385,227 + GFF3530 0.49 +0.2 385,228 - GFF3530 0.49 +0.4 385,243 - GFF3530 0.50 -0.0 385,314 - GFF3530 0.53 -1.1 385,695 + GFF3530 0.70 +0.0 386,109 + GFF3530 0.88 -0.8 386,221 + +0.0 386,329 - -1.2 386,690 - GFF3531 0.20 -1.8 386,808 + GFF3531 0.30 -0.3 386,907 + GFF3531 0.39 +1.3 386,943 + GFF3531 0.42 +0.6 386,944 - GFF3531 0.42 +1.5 386,944 - GFF3531 0.42 +0.1
Or see this region's nucleotide sequence