Strain Fitness in Xanthobacter sp. DMC5 around GFF350

Experiment: D,L-Lactate and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF349 and GFF350 are separated by 351 nucleotidesGFF350 and GFF351 are separated by 13 nucleotides GFF349 - Putative ring-cleaving dioxygenase MhqO, at 356,621 to 357,553 GFF349 GFF350 - hypothetical protein, at 357,905 to 359,296 GFF350 GFF351 - hypothetical protein, at 359,310 to 360,335 GFF351 Position (kb) 357 358 359 360Strain fitness (log2 ratio) -2 -1 0 1at 357.282 kb on + strand, within GFF349at 357.283 kb on - strand, within GFF349at 357.283 kb on - strand, within GFF349at 357.414 kb on + strand, within GFF349at 357.415 kb on - strand, within GFF349at 357.423 kb on + strand, within GFF349at 357.423 kb on + strand, within GFF349at 357.424 kb on - strand, within GFF349at 357.424 kb on - strand, within GFF349at 357.424 kb on - strand, within GFF349at 357.424 kb on - strand, within GFF349at 357.424 kb on - strand, within GFF349at 357.424 kb on - strand, within GFF349at 357.424 kb on - strand, within GFF349at 357.487 kb on - strandat 357.608 kb on - strandat 357.751 kb on - strandat 357.751 kb on - strandat 358.077 kb on + strand, within GFF350at 358.078 kb on - strand, within GFF350at 358.158 kb on - strand, within GFF350at 358.179 kb on - strand, within GFF350at 358.196 kb on + strand, within GFF350at 358.196 kb on + strand, within GFF350at 358.197 kb on - strand, within GFF350at 358.197 kb on - strand, within GFF350at 358.197 kb on - strand, within GFF350at 358.242 kb on - strand, within GFF350at 358.242 kb on - strand, within GFF350at 358.242 kb on - strand, within GFF350at 358.259 kb on + strand, within GFF350at 358.340 kb on + strand, within GFF350at 358.340 kb on + strand, within GFF350at 358.409 kb on + strand, within GFF350at 358.410 kb on - strand, within GFF350at 358.410 kb on - strand, within GFF350at 358.427 kb on + strand, within GFF350at 358.427 kb on + strand, within GFF350at 358.428 kb on - strand, within GFF350at 358.428 kb on - strand, within GFF350at 358.428 kb on - strand, within GFF350at 358.541 kb on + strand, within GFF350at 358.542 kb on - strand, within GFF350at 358.592 kb on + strand, within GFF350at 358.593 kb on - strand, within GFF350at 358.593 kb on - strand, within GFF350at 358.593 kb on - strand, within GFF350at 358.595 kb on + strand, within GFF350at 358.706 kb on + strand, within GFF350at 358.707 kb on - strand, within GFF350at 358.707 kb on - strand, within GFF350at 358.746 kb on - strand, within GFF350at 358.758 kb on - strand, within GFF350at 358.758 kb on - strand, within GFF350at 358.758 kb on - strand, within GFF350at 358.758 kb on - strand, within GFF350at 358.778 kb on + strand, within GFF350at 358.778 kb on + strand, within GFF350at 358.778 kb on + strand, within GFF350at 358.779 kb on - strand, within GFF350at 358.839 kb on - strand, within GFF350at 358.839 kb on - strand, within GFF350at 358.857 kb on - strand, within GFF350at 358.857 kb on - strand, within GFF350at 358.955 kb on + strand, within GFF350at 358.956 kb on - strand, within GFF350at 358.956 kb on - strand, within GFF350at 358.986 kb on - strand, within GFF350at 358.986 kb on - strand, within GFF350at 358.986 kb on - strand, within GFF350at 358.991 kb on + strand, within GFF350at 358.992 kb on - strand, within GFF350at 358.997 kb on - strand, within GFF350at 358.997 kb on - strand, within GFF350at 359.040 kb on + strand, within GFF350at 359.040 kb on + strand, within GFF350at 359.040 kb on + strand, within GFF350at 359.041 kb on - strand, within GFF350at 359.091 kb on - strand, within GFF350at 359.096 kb on + strand, within GFF350at 359.096 kb on + strand, within GFF350at 359.097 kb on - strand, within GFF350at 359.216 kb on + strandat 359.216 kb on + strandat 359.216 kb on + strandat 359.216 kb on + strandat 359.216 kb on + strandat 359.217 kb on - strandat 359.217 kb on - strandat 359.246 kb on + strandat 359.246 kb on + strandat 359.480 kb on + strand, within GFF351at 359.598 kb on + strand, within GFF351at 360.165 kb on + strand, within GFF351at 360.165 kb on + strand, within GFF351at 360.166 kb on - strand, within GFF351at 360.166 kb on - strand, within GFF351at 360.167 kb on + strand, within GFF351at 360.167 kb on + strand, within GFF351at 360.167 kb on + strand, within GFF351at 360.168 kb on - strand, within GFF351at 360.168 kb on - strand, within GFF351

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
remove
357,282 + GFF349 0.71 -0.5
357,283 - GFF349 0.71 +0.5
357,283 - GFF349 0.71 -0.9
357,414 + GFF349 0.85 +0.5
357,415 - GFF349 0.85 +0.1
357,423 + GFF349 0.86 +0.4
357,423 + GFF349 0.86 +0.5
357,424 - GFF349 0.86 -1.9
357,424 - GFF349 0.86 +0.9
357,424 - GFF349 0.86 -0.2
357,424 - GFF349 0.86 -0.3
357,424 - GFF349 0.86 +0.6
357,424 - GFF349 0.86 +0.2
357,424 - GFF349 0.86 +0.5
357,487 - +1.5
357,608 - -0.1
357,751 - -1.2
357,751 - -0.1
358,077 + GFF350 0.12 -1.2
358,078 - GFF350 0.12 +0.8
358,158 - GFF350 0.18 -0.8
358,179 - GFF350 0.20 +0.3
358,196 + GFF350 0.21 -1.1
358,196 + GFF350 0.21 -0.0
358,197 - GFF350 0.21 +0.4
358,197 - GFF350 0.21 +0.8
358,197 - GFF350 0.21 -0.4
358,242 - GFF350 0.24 -1.2
358,242 - GFF350 0.24 +0.2
358,242 - GFF350 0.24 -0.1
358,259 + GFF350 0.25 +1.0
358,340 + GFF350 0.31 -0.4
358,340 + GFF350 0.31 -0.7
358,409 + GFF350 0.36 +0.2
358,410 - GFF350 0.36 +0.6
358,410 - GFF350 0.36 -0.2
358,427 + GFF350 0.38 -0.8
358,427 + GFF350 0.38 +0.3
358,428 - GFF350 0.38 +0.1
358,428 - GFF350 0.38 -0.1
358,428 - GFF350 0.38 +0.6
358,541 + GFF350 0.46 -0.8
358,542 - GFF350 0.46 -0.4
358,592 + GFF350 0.49 +0.6
358,593 - GFF350 0.49 -0.4
358,593 - GFF350 0.49 +0.7
358,593 - GFF350 0.49 -1.6
358,595 + GFF350 0.50 +0.3
358,706 + GFF350 0.58 -1.0
358,707 - GFF350 0.58 -0.9
358,707 - GFF350 0.58 -1.9
358,746 - GFF350 0.60 +0.1
358,758 - GFF350 0.61 -0.2
358,758 - GFF350 0.61 -0.1
358,758 - GFF350 0.61 -0.1
358,758 - GFF350 0.61 +0.4
358,778 + GFF350 0.63 -0.9
358,778 + GFF350 0.63 +0.0
358,778 + GFF350 0.63 -0.1
358,779 - GFF350 0.63 +0.2
358,839 - GFF350 0.67 +0.5
358,839 - GFF350 0.67 -0.3
358,857 - GFF350 0.68 -0.5
358,857 - GFF350 0.68 -0.4
358,955 + GFF350 0.75 -0.3
358,956 - GFF350 0.76 +1.5
358,956 - GFF350 0.76 +1.0
358,986 - GFF350 0.78 +0.4
358,986 - GFF350 0.78 -0.1
358,986 - GFF350 0.78 -0.1
358,991 + GFF350 0.78 -0.1
358,992 - GFF350 0.78 -0.1
358,997 - GFF350 0.78 -0.4
358,997 - GFF350 0.78 +1.3
359,040 + GFF350 0.82 -1.5
359,040 + GFF350 0.82 +0.1
359,040 + GFF350 0.82 +0.9
359,041 - GFF350 0.82 -0.0
359,091 - GFF350 0.85 +0.3
359,096 + GFF350 0.86 -0.2
359,096 + GFF350 0.86 -0.8
359,097 - GFF350 0.86 -2.0
359,216 + +0.2
359,216 + +0.3
359,216 + +0.7
359,216 + -0.6
359,216 + +0.7
359,217 - +0.1
359,217 - -0.5
359,246 + -0.2
359,246 + -1.3
359,480 + GFF351 0.17 -0.6
359,598 + GFF351 0.28 +0.8
360,165 + GFF351 0.83 -0.0
360,165 + GFF351 0.83 +0.1
360,166 - GFF351 0.83 +0.1
360,166 - GFF351 0.83 -0.0
360,167 + GFF351 0.84 -0.6
360,167 + GFF351 0.84 +0.2
360,167 + GFF351 0.84 -2.0
360,168 - GFF351 0.84 -0.5
360,168 - GFF351 0.84 +0.1

Or see this region's nucleotide sequence