Strain Fitness in Xanthobacter sp. DMC5 around GFF3455

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3454 and GFF3455 are separated by 4 nucleotidesGFF3455 and GFF3456 overlap by 17 nucleotidesGFF3456 and GFF3457 are separated by 16 nucleotides GFF3454 - High-affinity branched-chain amino acid transport system permease protein LivH, at 305,023 to 305,895 GFF3454 GFF3455 - Vitamin B12 import ATP-binding protein BtuD, at 305,900 to 307,744 GFF3455 GFF3456 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 307,728 to 308,432 GFF3456 GFF3457 - Shikimate dehydrogenase (NADP(+)), at 308,449 to 309,288 GFF3457 Position (kb) 305 306 307 308Strain fitness (log2 ratio) -2 -1 0 1 2at 305.057 kb on + strandat 305.057 kb on + strandat 305.074 kb on + strandat 305.074 kb on + strandat 305.074 kb on + strandat 305.074 kb on + strandat 305.075 kb on - strandat 305.160 kb on + strand, within GFF3454at 305.160 kb on + strand, within GFF3454at 305.160 kb on + strand, within GFF3454at 305.161 kb on - strand, within GFF3454at 305.161 kb on - strand, within GFF3454at 305.164 kb on + strand, within GFF3454at 305.164 kb on + strand, within GFF3454at 305.164 kb on + strand, within GFF3454at 305.164 kb on + strand, within GFF3454at 305.165 kb on - strand, within GFF3454at 305.165 kb on - strand, within GFF3454at 305.165 kb on - strand, within GFF3454at 305.165 kb on - strand, within GFF3454at 305.165 kb on - strand, within GFF3454at 305.165 kb on - strand, within GFF3454at 305.166 kb on - strand, within GFF3454at 305.173 kb on + strand, within GFF3454at 305.206 kb on + strand, within GFF3454at 305.207 kb on - strand, within GFF3454at 305.207 kb on - strand, within GFF3454at 305.377 kb on + strand, within GFF3454at 305.587 kb on + strand, within GFF3454at 305.587 kb on + strand, within GFF3454at 305.588 kb on - strand, within GFF3454at 305.588 kb on - strand, within GFF3454at 305.654 kb on - strand, within GFF3454at 305.680 kb on + strand, within GFF3454at 305.680 kb on + strand, within GFF3454at 305.734 kb on + strand, within GFF3454at 305.735 kb on - strand, within GFF3454at 305.735 kb on - strand, within GFF3454at 305.735 kb on - strand, within GFF3454at 305.791 kb on + strand, within GFF3454at 305.791 kb on + strand, within GFF3454at 305.792 kb on - strand, within GFF3454at 305.792 kb on - strand, within GFF3454at 305.792 kb on - strand, within GFF3454at 305.821 kb on + strandat 305.990 kb on + strandat 305.990 kb on + strandat 305.990 kb on + strandat 305.991 kb on - strandat 305.991 kb on - strandat 306.148 kb on + strand, within GFF3455at 306.149 kb on - strand, within GFF3455at 306.149 kb on - strand, within GFF3455at 306.159 kb on - strand, within GFF3455at 306.175 kb on + strand, within GFF3455at 306.175 kb on + strand, within GFF3455at 306.175 kb on + strand, within GFF3455at 306.443 kb on + strand, within GFF3455at 306.444 kb on - strand, within GFF3455at 306.444 kb on - strand, within GFF3455at 306.449 kb on + strand, within GFF3455at 306.450 kb on - strand, within GFF3455at 306.450 kb on - strand, within GFF3455at 306.450 kb on - strand, within GFF3455at 306.491 kb on + strand, within GFF3455at 306.491 kb on + strand, within GFF3455at 306.492 kb on - strand, within GFF3455at 306.492 kb on - strand, within GFF3455at 306.492 kb on - strand, within GFF3455at 306.650 kb on + strand, within GFF3455at 306.650 kb on + strand, within GFF3455at 306.650 kb on + strand, within GFF3455at 306.650 kb on + strand, within GFF3455at 306.650 kb on + strand, within GFF3455at 306.651 kb on - strand, within GFF3455at 306.651 kb on - strand, within GFF3455at 306.651 kb on - strand, within GFF3455at 306.651 kb on - strand, within GFF3455at 306.760 kb on + strand, within GFF3455at 306.839 kb on + strand, within GFF3455at 306.840 kb on - strand, within GFF3455at 306.840 kb on - strand, within GFF3455at 306.840 kb on - strand, within GFF3455at 307.388 kb on + strand, within GFF3455at 307.389 kb on - strand, within GFF3455at 307.389 kb on - strand, within GFF3455at 307.389 kb on - strand, within GFF3455at 307.707 kb on - strandat 308.340 kb on + strand, within GFF3456at 308.340 kb on + strand, within GFF3456at 308.341 kb on - strand, within GFF3456at 308.418 kb on + strandat 308.506 kb on + strandat 308.506 kb on + strandat 308.507 kb on - strandat 308.507 kb on - strandat 308.507 kb on - strandat 308.507 kb on - strandat 308.512 kb on - strandat 308.512 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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305,057 + +0.3
305,057 + +0.5
305,074 + +1.2
305,074 + +0.2
305,074 + +0.0
305,074 + +0.1
305,075 - +0.4
305,160 + GFF3454 0.16 -0.9
305,160 + GFF3454 0.16 -1.5
305,160 + GFF3454 0.16 +0.5
305,161 - GFF3454 0.16 +0.5
305,161 - GFF3454 0.16 +0.5
305,164 + GFF3454 0.16 -0.6
305,164 + GFF3454 0.16 -0.4
305,164 + GFF3454 0.16 +0.0
305,164 + GFF3454 0.16 -0.9
305,165 - GFF3454 0.16 -0.8
305,165 - GFF3454 0.16 +0.3
305,165 - GFF3454 0.16 -0.8
305,165 - GFF3454 0.16 +0.1
305,165 - GFF3454 0.16 +0.1
305,165 - GFF3454 0.16 -0.9
305,166 - GFF3454 0.16 +0.2
305,173 + GFF3454 0.17 +0.8
305,206 + GFF3454 0.21 +0.3
305,207 - GFF3454 0.21 +0.4
305,207 - GFF3454 0.21 +0.7
305,377 + GFF3454 0.41 +0.7
305,587 + GFF3454 0.65 -0.6
305,587 + GFF3454 0.65 -0.5
305,588 - GFF3454 0.65 +0.5
305,588 - GFF3454 0.65 +0.5
305,654 - GFF3454 0.72 -0.5
305,680 + GFF3454 0.75 +0.5
305,680 + GFF3454 0.75 +0.1
305,734 + GFF3454 0.81 -0.9
305,735 - GFF3454 0.82 +0.7
305,735 - GFF3454 0.82 +0.4
305,735 - GFF3454 0.82 -1.3
305,791 + GFF3454 0.88 +0.4
305,791 + GFF3454 0.88 -0.3
305,792 - GFF3454 0.88 -1.0
305,792 - GFF3454 0.88 +0.2
305,792 - GFF3454 0.88 -0.1
305,821 + +0.3
305,990 + +0.7
305,990 + +0.5
305,990 + -0.4
305,991 - -0.2
305,991 - +0.7
306,148 + GFF3455 0.13 -1.2
306,149 - GFF3455 0.13 +0.2
306,149 - GFF3455 0.13 -0.4
306,159 - GFF3455 0.14 -0.0
306,175 + GFF3455 0.15 +1.2
306,175 + GFF3455 0.15 -2.0
306,175 + GFF3455 0.15 +0.1
306,443 + GFF3455 0.29 +0.0
306,444 - GFF3455 0.29 -0.6
306,444 - GFF3455 0.29 -0.5
306,449 + GFF3455 0.30 +0.3
306,450 - GFF3455 0.30 +0.1
306,450 - GFF3455 0.30 +0.1
306,450 - GFF3455 0.30 -0.5
306,491 + GFF3455 0.32 -1.0
306,491 + GFF3455 0.32 -0.1
306,492 - GFF3455 0.32 +0.6
306,492 - GFF3455 0.32 -0.1
306,492 - GFF3455 0.32 +0.4
306,650 + GFF3455 0.41 -0.3
306,650 + GFF3455 0.41 -1.2
306,650 + GFF3455 0.41 -0.5
306,650 + GFF3455 0.41 -0.1
306,650 + GFF3455 0.41 -0.2
306,651 - GFF3455 0.41 +0.3
306,651 - GFF3455 0.41 -1.4
306,651 - GFF3455 0.41 -0.2
306,651 - GFF3455 0.41 +0.7
306,760 + GFF3455 0.47 -0.1
306,839 + GFF3455 0.51 +1.2
306,840 - GFF3455 0.51 -0.9
306,840 - GFF3455 0.51 +0.8
306,840 - GFF3455 0.51 -0.9
307,388 + GFF3455 0.81 +0.6
307,389 - GFF3455 0.81 +0.6
307,389 - GFF3455 0.81 -0.9
307,389 - GFF3455 0.81 +0.6
307,707 - +0.2
308,340 + GFF3456 0.87 -0.3
308,340 + GFF3456 0.87 -1.9
308,341 - GFF3456 0.87 -0.2
308,418 + +2.4
308,506 + -0.1
308,506 + +0.7
308,507 - +0.2
308,507 - +0.7
308,507 - -0.3
308,507 - +0.7
308,512 - +0.0
308,512 - -0.4

Or see this region's nucleotide sequence