Strain Fitness in Xanthobacter sp. DMC5 around GFF3454

Experiment: D,L-Lactate and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3453 and GFF3454 are separated by 194 nucleotidesGFF3454 and GFF3455 are separated by 4 nucleotides GFF3453 - Leu/Ile/Val-binding protein, at 303,599 to 304,828 GFF3453 GFF3454 - High-affinity branched-chain amino acid transport system permease protein LivH, at 305,023 to 305,895 GFF3454 GFF3455 - Vitamin B12 import ATP-binding protein BtuD, at 305,900 to 307,744 GFF3455 Position (kb) 305 306Strain fitness (log2 ratio) -2 -1 0 1at 304.230 kb on - strand, within GFF3453at 304.358 kb on + strand, within GFF3453at 304.358 kb on + strand, within GFF3453at 304.359 kb on - strand, within GFF3453at 304.359 kb on - strand, within GFF3453at 304.469 kb on + strand, within GFF3453at 304.469 kb on + strand, within GFF3453at 304.469 kb on + strand, within GFF3453at 304.520 kb on + strand, within GFF3453at 304.520 kb on + strand, within GFF3453at 304.521 kb on - strand, within GFF3453at 304.533 kb on - strand, within GFF3453at 304.533 kb on - strand, within GFF3453at 304.571 kb on + strand, within GFF3453at 304.572 kb on - strand, within GFF3453at 305.057 kb on + strandat 305.057 kb on + strandat 305.074 kb on + strandat 305.074 kb on + strandat 305.074 kb on + strandat 305.074 kb on + strandat 305.075 kb on - strandat 305.160 kb on + strand, within GFF3454at 305.160 kb on + strand, within GFF3454at 305.160 kb on + strand, within GFF3454at 305.161 kb on - strand, within GFF3454at 305.161 kb on - strand, within GFF3454at 305.164 kb on + strand, within GFF3454at 305.164 kb on + strand, within GFF3454at 305.164 kb on + strand, within GFF3454at 305.164 kb on + strand, within GFF3454at 305.165 kb on - strand, within GFF3454at 305.165 kb on - strand, within GFF3454at 305.165 kb on - strand, within GFF3454at 305.165 kb on - strand, within GFF3454at 305.165 kb on - strand, within GFF3454at 305.165 kb on - strand, within GFF3454at 305.166 kb on - strand, within GFF3454at 305.173 kb on + strand, within GFF3454at 305.206 kb on + strand, within GFF3454at 305.207 kb on - strand, within GFF3454at 305.207 kb on - strand, within GFF3454at 305.377 kb on + strand, within GFF3454at 305.587 kb on + strand, within GFF3454at 305.587 kb on + strand, within GFF3454at 305.588 kb on - strand, within GFF3454at 305.588 kb on - strand, within GFF3454at 305.654 kb on - strand, within GFF3454at 305.680 kb on + strand, within GFF3454at 305.680 kb on + strand, within GFF3454at 305.734 kb on + strand, within GFF3454at 305.735 kb on - strand, within GFF3454at 305.735 kb on - strand, within GFF3454at 305.735 kb on - strand, within GFF3454at 305.791 kb on + strand, within GFF3454at 305.791 kb on + strand, within GFF3454at 305.792 kb on - strand, within GFF3454at 305.792 kb on - strand, within GFF3454at 305.792 kb on - strand, within GFF3454at 305.821 kb on + strandat 305.990 kb on + strandat 305.990 kb on + strandat 305.990 kb on + strandat 305.991 kb on - strandat 305.991 kb on - strandat 306.148 kb on + strand, within GFF3455at 306.149 kb on - strand, within GFF3455at 306.149 kb on - strand, within GFF3455at 306.159 kb on - strand, within GFF3455at 306.175 kb on + strand, within GFF3455at 306.175 kb on + strand, within GFF3455at 306.175 kb on + strand, within GFF3455at 306.443 kb on + strand, within GFF3455at 306.444 kb on - strand, within GFF3455at 306.444 kb on - strand, within GFF3455at 306.449 kb on + strand, within GFF3455at 306.450 kb on - strand, within GFF3455at 306.450 kb on - strand, within GFF3455at 306.450 kb on - strand, within GFF3455at 306.491 kb on + strand, within GFF3455at 306.491 kb on + strand, within GFF3455at 306.492 kb on - strand, within GFF3455at 306.492 kb on - strand, within GFF3455at 306.492 kb on - strand, within GFF3455at 306.650 kb on + strand, within GFF3455at 306.650 kb on + strand, within GFF3455at 306.650 kb on + strand, within GFF3455at 306.650 kb on + strand, within GFF3455at 306.650 kb on + strand, within GFF3455at 306.651 kb on - strand, within GFF3455at 306.651 kb on - strand, within GFF3455at 306.651 kb on - strand, within GFF3455at 306.651 kb on - strand, within GFF3455at 306.760 kb on + strand, within GFF3455at 306.839 kb on + strand, within GFF3455at 306.840 kb on - strand, within GFF3455at 306.840 kb on - strand, within GFF3455at 306.840 kb on - strand, within GFF3455

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
remove
304,230 - GFF3453 0.51 -0.2
304,358 + GFF3453 0.62 +1.3
304,358 + GFF3453 0.62 -0.7
304,359 - GFF3453 0.62 +0.0
304,359 - GFF3453 0.62 +1.0
304,469 + GFF3453 0.71 -0.2
304,469 + GFF3453 0.71 -1.0
304,469 + GFF3453 0.71 +1.0
304,520 + GFF3453 0.75 +0.4
304,520 + GFF3453 0.75 +0.0
304,521 - GFF3453 0.75 +0.5
304,533 - GFF3453 0.76 -0.4
304,533 - GFF3453 0.76 -0.4
304,571 + GFF3453 0.79 -0.7
304,572 - GFF3453 0.79 -1.9
305,057 + +0.3
305,057 + +0.5
305,074 + +1.2
305,074 + +0.2
305,074 + +0.0
305,074 + +0.1
305,075 - +0.4
305,160 + GFF3454 0.16 -0.9
305,160 + GFF3454 0.16 -1.5
305,160 + GFF3454 0.16 +0.5
305,161 - GFF3454 0.16 +0.5
305,161 - GFF3454 0.16 +0.5
305,164 + GFF3454 0.16 -0.6
305,164 + GFF3454 0.16 -0.4
305,164 + GFF3454 0.16 +0.0
305,164 + GFF3454 0.16 -0.9
305,165 - GFF3454 0.16 -0.8
305,165 - GFF3454 0.16 +0.3
305,165 - GFF3454 0.16 -0.8
305,165 - GFF3454 0.16 +0.1
305,165 - GFF3454 0.16 +0.1
305,165 - GFF3454 0.16 -0.9
305,166 - GFF3454 0.16 +0.2
305,173 + GFF3454 0.17 +0.8
305,206 + GFF3454 0.21 +0.3
305,207 - GFF3454 0.21 +0.4
305,207 - GFF3454 0.21 +0.7
305,377 + GFF3454 0.41 +0.7
305,587 + GFF3454 0.65 -0.6
305,587 + GFF3454 0.65 -0.5
305,588 - GFF3454 0.65 +0.5
305,588 - GFF3454 0.65 +0.5
305,654 - GFF3454 0.72 -0.5
305,680 + GFF3454 0.75 +0.5
305,680 + GFF3454 0.75 +0.1
305,734 + GFF3454 0.81 -0.9
305,735 - GFF3454 0.82 +0.7
305,735 - GFF3454 0.82 +0.4
305,735 - GFF3454 0.82 -1.3
305,791 + GFF3454 0.88 +0.4
305,791 + GFF3454 0.88 -0.3
305,792 - GFF3454 0.88 -1.0
305,792 - GFF3454 0.88 +0.2
305,792 - GFF3454 0.88 -0.1
305,821 + +0.3
305,990 + +0.7
305,990 + +0.5
305,990 + -0.4
305,991 - -0.2
305,991 - +0.7
306,148 + GFF3455 0.13 -1.2
306,149 - GFF3455 0.13 +0.2
306,149 - GFF3455 0.13 -0.4
306,159 - GFF3455 0.14 -0.0
306,175 + GFF3455 0.15 +1.2
306,175 + GFF3455 0.15 -2.0
306,175 + GFF3455 0.15 +0.1
306,443 + GFF3455 0.29 +0.0
306,444 - GFF3455 0.29 -0.6
306,444 - GFF3455 0.29 -0.5
306,449 + GFF3455 0.30 +0.3
306,450 - GFF3455 0.30 +0.1
306,450 - GFF3455 0.30 +0.1
306,450 - GFF3455 0.30 -0.5
306,491 + GFF3455 0.32 -1.0
306,491 + GFF3455 0.32 -0.1
306,492 - GFF3455 0.32 +0.6
306,492 - GFF3455 0.32 -0.1
306,492 - GFF3455 0.32 +0.4
306,650 + GFF3455 0.41 -0.3
306,650 + GFF3455 0.41 -1.2
306,650 + GFF3455 0.41 -0.5
306,650 + GFF3455 0.41 -0.1
306,650 + GFF3455 0.41 -0.2
306,651 - GFF3455 0.41 +0.3
306,651 - GFF3455 0.41 -1.4
306,651 - GFF3455 0.41 -0.2
306,651 - GFF3455 0.41 +0.7
306,760 + GFF3455 0.47 -0.1
306,839 + GFF3455 0.51 +1.2
306,840 - GFF3455 0.51 -0.9
306,840 - GFF3455 0.51 +0.8
306,840 - GFF3455 0.51 -0.9

Or see this region's nucleotide sequence