Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3441 and GFF3442 overlap by 4 nucleotides GFF3442 and GFF3443 overlap by 4 nucleotides GFF3443 and GFF3444 overlap by 4 nucleotides
GFF3441 - Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI, at 292,074 to 293,291
GFF3441
GFF3442 - hypothetical protein, at 293,288 to 294,343
GFF3442
GFF3443 - Putative phosphonates utilization ATP-binding protein PhnK, at 294,340 to 295,119
GFF3443
GFF3444 - Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL, at 295,116 to 295,901
GFF3444
Position (kb) 293
294
295 Strain fitness (log2 ratio) -2
-1
0
1 at 292.443 kb on + strand, within GFF3441 at 292.819 kb on - strand, within GFF3441 at 292.819 kb on - strand, within GFF3441 at 292.837 kb on - strand, within GFF3441 at 293.010 kb on + strand, within GFF3441 at 293.193 kb on + strand at 293.194 kb on - strand at 293.336 kb on + strand at 293.337 kb on - strand at 293.348 kb on + strand at 293.415 kb on - strand, within GFF3442 at 293.828 kb on + strand, within GFF3442 at 293.828 kb on + strand, within GFF3442 at 293.828 kb on + strand, within GFF3442 at 293.828 kb on + strand, within GFF3442 at 293.828 kb on + strand, within GFF3442 at 293.829 kb on - strand, within GFF3442 at 293.829 kb on - strand, within GFF3442 at 293.829 kb on - strand, within GFF3442 at 293.829 kb on - strand, within GFF3442 at 293.829 kb on - strand, within GFF3442 at 293.957 kb on + strand, within GFF3442 at 293.957 kb on + strand, within GFF3442 at 293.957 kb on + strand, within GFF3442 at 293.957 kb on + strand, within GFF3442 at 293.957 kb on + strand, within GFF3442 at 293.958 kb on - strand, within GFF3442 at 293.958 kb on - strand, within GFF3442 at 293.958 kb on - strand, within GFF3442 at 293.958 kb on - strand, within GFF3442 at 294.066 kb on - strand, within GFF3442 at 294.179 kb on + strand, within GFF3442 at 294.180 kb on - strand, within GFF3442 at 294.180 kb on - strand, within GFF3442 at 294.180 kb on - strand, within GFF3442 at 294.385 kb on + strand at 294.455 kb on + strand, within GFF3443 at 294.455 kb on + strand, within GFF3443 at 294.535 kb on + strand, within GFF3443 at 295.081 kb on + strand at 295.082 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 292,443 + GFF3441 0.30 -0.7 292,819 - GFF3441 0.61 -1.1 292,819 - GFF3441 0.61 +1.3 292,837 - GFF3441 0.63 +0.5 293,010 + GFF3441 0.77 -0.7 293,193 + -0.4 293,194 - +0.4 293,336 + -0.4 293,337 - +1.2 293,348 + -0.3 293,415 - GFF3442 0.12 +1.1 293,828 + GFF3442 0.51 -0.2 293,828 + GFF3442 0.51 -0.6 293,828 + GFF3442 0.51 +0.3 293,828 + GFF3442 0.51 +1.6 293,828 + GFF3442 0.51 -0.3 293,829 - GFF3442 0.51 -0.6 293,829 - GFF3442 0.51 +0.1 293,829 - GFF3442 0.51 +0.8 293,829 - GFF3442 0.51 -1.0 293,829 - GFF3442 0.51 +0.4 293,957 + GFF3442 0.63 -0.7 293,957 + GFF3442 0.63 +0.1 293,957 + GFF3442 0.63 -0.3 293,957 + GFF3442 0.63 -2.3 293,957 + GFF3442 0.63 -0.4 293,958 - GFF3442 0.63 -1.6 293,958 - GFF3442 0.63 +0.3 293,958 - GFF3442 0.63 +0.1 293,958 - GFF3442 0.63 -0.1 294,066 - GFF3442 0.74 +0.2 294,179 + GFF3442 0.84 -0.9 294,180 - GFF3442 0.84 +0.0 294,180 - GFF3442 0.84 +0.2 294,180 - GFF3442 0.84 +0.2 294,385 + -1.9 294,455 + GFF3443 0.15 -0.6 294,455 + GFF3443 0.15 +0.8 294,535 + GFF3443 0.25 -0.7 295,081 + +1.5 295,082 - -1.8
Or see this region's nucleotide sequence