Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3369 and GFF3370 are separated by 270 nucleotides GFF3370 and GFF3371 overlap by 4 nucleotides GFF3371 and GFF3372 overlap by 4 nucleotides GFF3372 and GFF3373 overlap by 4 nucleotides
GFF3369 - hypothetical protein, at 214,355 to 215,344
GFF3369
GFF3370 - Low-molecular weight cobalt-containing nitrile hydratase subunit alpha, at 215,615 to 216,238
GFF3370
GFF3371 - hypothetical protein, at 216,235 to 216,537
GFF3371
GFF3372 - hypothetical protein, at 216,534 to 216,950
GFF3372
GFF3373 - Taurine import ATP-binding protein TauB, at 216,947 to 217,798
GFF3373
Position (kb) 215
216
217 Strain fitness (log2 ratio) -1
0
1 at 214.670 kb on + strand, within GFF3369 at 214.670 kb on + strand, within GFF3369 at 214.671 kb on - strand, within GFF3369 at 214.671 kb on - strand, within GFF3369 at 214.671 kb on - strand, within GFF3369 at 214.671 kb on - strand, within GFF3369 at 214.877 kb on + strand, within GFF3369 at 214.878 kb on - strand, within GFF3369 at 215.051 kb on + strand, within GFF3369 at 215.156 kb on - strand, within GFF3369 at 215.156 kb on - strand, within GFF3369 at 215.322 kb on - strand at 215.492 kb on + strand at 215.492 kb on + strand at 215.492 kb on + strand at 215.616 kb on + strand at 215.616 kb on + strand at 215.616 kb on + strand at 215.727 kb on + strand, within GFF3370 at 215.727 kb on + strand, within GFF3370 at 215.727 kb on + strand, within GFF3370 at 215.728 kb on - strand, within GFF3370 at 215.850 kb on + strand, within GFF3370 at 215.850 kb on + strand, within GFF3370 at 215.850 kb on + strand, within GFF3370 at 215.850 kb on + strand, within GFF3370 at 215.850 kb on + strand, within GFF3370 at 215.850 kb on + strand, within GFF3370 at 215.851 kb on - strand, within GFF3370 at 215.851 kb on - strand, within GFF3370 at 215.851 kb on - strand, within GFF3370 at 215.851 kb on - strand, within GFF3370 at 215.917 kb on + strand, within GFF3370 at 215.918 kb on - strand, within GFF3370 at 215.932 kb on + strand, within GFF3370 at 216.171 kb on + strand, within GFF3370 at 216.175 kb on - strand, within GFF3370 at 216.314 kb on + strand, within GFF3371 at 216.353 kb on + strand, within GFF3371 at 216.455 kb on + strand, within GFF3371 at 216.455 kb on + strand, within GFF3371 at 216.456 kb on - strand, within GFF3371 at 216.456 kb on - strand, within GFF3371 at 216.581 kb on + strand, within GFF3372 at 216.716 kb on - strand, within GFF3372 at 216.733 kb on + strand, within GFF3372 at 216.733 kb on + strand, within GFF3372 at 216.733 kb on + strand, within GFF3372 at 216.734 kb on - strand, within GFF3372 at 216.734 kb on - strand, within GFF3372 at 216.734 kb on - strand, within GFF3372 at 216.853 kb on + strand, within GFF3372 at 216.853 kb on + strand, within GFF3372 at 216.901 kb on + strand, within GFF3372 at 217.068 kb on + strand, within GFF3373 at 217.069 kb on - strand, within GFF3373 at 217.221 kb on + strand, within GFF3373
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 214,670 + GFF3369 0.32 -0.2 214,670 + GFF3369 0.32 +0.5 214,671 - GFF3369 0.32 -0.9 214,671 - GFF3369 0.32 -0.9 214,671 - GFF3369 0.32 -0.6 214,671 - GFF3369 0.32 +0.9 214,877 + GFF3369 0.53 +0.8 214,878 - GFF3369 0.53 +0.1 215,051 + GFF3369 0.70 +0.9 215,156 - GFF3369 0.81 +0.1 215,156 - GFF3369 0.81 +0.3 215,322 - -0.1 215,492 + -0.2 215,492 + +0.2 215,492 + -0.3 215,616 + -0.3 215,616 + +0.1 215,616 + +0.9 215,727 + GFF3370 0.18 -1.5 215,727 + GFF3370 0.18 +0.9 215,727 + GFF3370 0.18 -0.3 215,728 - GFF3370 0.18 -1.2 215,850 + GFF3370 0.38 -1.2 215,850 + GFF3370 0.38 -0.2 215,850 + GFF3370 0.38 -0.1 215,850 + GFF3370 0.38 -0.1 215,850 + GFF3370 0.38 +1.2 215,850 + GFF3370 0.38 -0.7 215,851 - GFF3370 0.38 -0.9 215,851 - GFF3370 0.38 +0.1 215,851 - GFF3370 0.38 -0.4 215,851 - GFF3370 0.38 +0.6 215,917 + GFF3370 0.48 +1.1 215,918 - GFF3370 0.49 +0.6 215,932 + GFF3370 0.51 +0.3 216,171 + GFF3370 0.89 +1.1 216,175 - GFF3370 0.90 -0.3 216,314 + GFF3371 0.26 +0.5 216,353 + GFF3371 0.39 -0.4 216,455 + GFF3371 0.73 +0.3 216,455 + GFF3371 0.73 +0.9 216,456 - GFF3371 0.73 +0.3 216,456 - GFF3371 0.73 +0.9 216,581 + GFF3372 0.11 +0.1 216,716 - GFF3372 0.44 -1.1 216,733 + GFF3372 0.48 -1.3 216,733 + GFF3372 0.48 -0.6 216,733 + GFF3372 0.48 -0.7 216,734 - GFF3372 0.48 -0.4 216,734 - GFF3372 0.48 -0.3 216,734 - GFF3372 0.48 -0.5 216,853 + GFF3372 0.76 +0.0 216,853 + GFF3372 0.76 +1.0 216,901 + GFF3372 0.88 -0.3 217,068 + GFF3373 0.14 +0.1 217,069 - GFF3373 0.14 -0.9 217,221 + GFF3373 0.32 +0.4
Or see this region's nucleotide sequence