Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3342 and GFF3343 are separated by 1 nucleotides GFF3343 and GFF3344 are separated by 20 nucleotides GFF3344 and GFF3345 are separated by 10 nucleotides
GFF3342 - hypothetical protein, at 184,043 to 185,293
GFF3342
GFF3343 - hypothetical protein, at 185,295 to 186,524
GFF3343
GFF3344 - 1,4-dihydroxy-2-naphthoyl-CoA synthase, at 186,545 to 187,366
GFF3344
GFF3345 - 2-succinylbenzoate--CoA ligase, at 187,377 to 188,798
GFF3345
Position (kb) 185
186
187 Strain fitness (log2 ratio) -1
0
1 at 184.505 kb on + strand, within GFF3342 at 184.589 kb on + strand, within GFF3342 at 184.590 kb on - strand, within GFF3342 at 184.901 kb on + strand, within GFF3342 at 184.901 kb on + strand, within GFF3342 at 184.901 kb on + strand, within GFF3342 at 184.902 kb on - strand, within GFF3342 at 184.911 kb on + strand, within GFF3342 at 184.912 kb on - strand, within GFF3342 at 185.156 kb on + strand, within GFF3342 at 185.156 kb on + strand, within GFF3342 at 185.156 kb on + strand, within GFF3342 at 185.156 kb on + strand, within GFF3342 at 185.156 kb on + strand, within GFF3342 at 185.156 kb on + strand, within GFF3342 at 185.156 kb on + strand, within GFF3342 at 185.156 kb on + strand, within GFF3342 at 185.156 kb on + strand, within GFF3342 at 185.156 kb on + strand, within GFF3342 at 185.157 kb on - strand, within GFF3342 at 185.157 kb on - strand, within GFF3342 at 185.157 kb on - strand, within GFF3342 at 185.157 kb on - strand, within GFF3342 at 185.157 kb on - strand, within GFF3342 at 185.157 kb on - strand, within GFF3342 at 185.157 kb on - strand, within GFF3342 at 185.198 kb on + strand at 185.198 kb on + strand at 185.198 kb on + strand at 185.199 kb on - strand at 185.205 kb on - strand at 185.205 kb on - strand at 185.470 kb on + strand, within GFF3343 at 185.665 kb on - strand, within GFF3343 at 185.982 kb on + strand, within GFF3343 at 185.983 kb on - strand, within GFF3343 at 185.983 kb on - strand, within GFF3343 at 186.393 kb on + strand, within GFF3343 at 186.393 kb on + strand, within GFF3343 at 186.394 kb on - strand, within GFF3343 at 186.394 kb on - strand, within GFF3343 at 186.566 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 184,505 + GFF3342 0.37 -0.2 184,589 + GFF3342 0.44 -0.3 184,590 - GFF3342 0.44 -0.3 184,901 + GFF3342 0.69 +1.2 184,901 + GFF3342 0.69 +0.9 184,901 + GFF3342 0.69 -0.4 184,902 - GFF3342 0.69 +1.0 184,911 + GFF3342 0.69 -0.2 184,912 - GFF3342 0.69 -0.2 185,156 + GFF3342 0.89 -0.7 185,156 + GFF3342 0.89 -0.2 185,156 + GFF3342 0.89 -1.4 185,156 + GFF3342 0.89 -0.1 185,156 + GFF3342 0.89 -0.8 185,156 + GFF3342 0.89 +0.4 185,156 + GFF3342 0.89 -0.1 185,156 + GFF3342 0.89 +0.4 185,156 + GFF3342 0.89 +0.5 185,156 + GFF3342 0.89 -0.0 185,157 - GFF3342 0.89 +0.3 185,157 - GFF3342 0.89 -0.3 185,157 - GFF3342 0.89 -1.2 185,157 - GFF3342 0.89 +0.2 185,157 - GFF3342 0.89 +0.4 185,157 - GFF3342 0.89 -0.5 185,157 - GFF3342 0.89 +0.1 185,198 + +0.1 185,198 + -0.6 185,198 + +1.4 185,199 - +1.1 185,205 - -0.1 185,205 - -0.4 185,470 + GFF3343 0.14 +0.9 185,665 - GFF3343 0.30 +0.7 185,982 + GFF3343 0.56 +0.2 185,983 - GFF3343 0.56 -0.3 185,983 - GFF3343 0.56 +0.6 186,393 + GFF3343 0.89 +0.3 186,393 + GFF3343 0.89 +0.5 186,394 - GFF3343 0.89 +0.7 186,394 - GFF3343 0.89 -0.4 186,566 + -0.9
Or see this region's nucleotide sequence