Strain Fitness in Xanthobacter sp. DMC5 around GFF3338

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3337 and GFF3338 are separated by 45 nucleotidesGFF3338 and GFF3339 are separated by 145 nucleotidesGFF3339 and GFF3340 are separated by 95 nucleotides GFF3337 - Isoleucine 2-epimerase, at 178,589 to 179,935 GFF3337 GFF3338 - Beta-alanine--pyruvate aminotransferase, at 179,981 to 181,315 GFF3338 GFF3339 - HTH-type transcriptional regulator PuuR, at 181,461 to 182,003 GFF3339 GFF3340 - putative acrylyl-CoA reductase AcuI, at 182,099 to 183,085 GFF3340 Position (kb) 179 180 181 182Strain fitness (log2 ratio) -2 -1 0 1 2at 179.030 kb on - strand, within GFF3337at 179.030 kb on - strand, within GFF3337at 179.067 kb on - strand, within GFF3337at 179.067 kb on - strand, within GFF3337at 179.067 kb on - strand, within GFF3337at 179.067 kb on - strand, within GFF3337at 179.216 kb on + strand, within GFF3337at 179.216 kb on + strand, within GFF3337at 179.216 kb on + strand, within GFF3337at 179.217 kb on - strand, within GFF3337at 179.217 kb on - strand, within GFF3337at 179.297 kb on + strand, within GFF3337at 179.297 kb on + strand, within GFF3337at 179.297 kb on + strand, within GFF3337at 179.297 kb on + strand, within GFF3337at 179.298 kb on - strand, within GFF3337at 179.540 kb on + strand, within GFF3337at 179.541 kb on - strand, within GFF3337at 179.720 kb on + strand, within GFF3337at 179.721 kb on - strand, within GFF3337at 179.721 kb on - strand, within GFF3337at 179.721 kb on - strand, within GFF3337at 179.721 kb on - strand, within GFF3337at 179.722 kb on + strand, within GFF3337at 179.722 kb on + strand, within GFF3337at 179.722 kb on + strand, within GFF3337at 179.835 kb on - strandat 179.932 kb on - strandat 180.129 kb on + strand, within GFF3338at 180.129 kb on + strand, within GFF3338at 180.130 kb on - strand, within GFF3338at 180.130 kb on - strand, within GFF3338at 180.200 kb on - strand, within GFF3338at 180.200 kb on - strand, within GFF3338at 180.294 kb on + strand, within GFF3338at 180.294 kb on + strand, within GFF3338at 180.294 kb on + strand, within GFF3338at 180.295 kb on - strand, within GFF3338at 180.295 kb on - strand, within GFF3338at 180.295 kb on - strand, within GFF3338at 180.295 kb on - strand, within GFF3338at 180.295 kb on - strand, within GFF3338at 180.345 kb on + strand, within GFF3338at 180.345 kb on + strand, within GFF3338at 180.345 kb on + strand, within GFF3338at 180.345 kb on + strand, within GFF3338at 180.345 kb on + strand, within GFF3338at 180.345 kb on + strand, within GFF3338at 180.346 kb on - strand, within GFF3338at 180.346 kb on - strand, within GFF3338at 180.346 kb on - strand, within GFF3338at 180.346 kb on - strand, within GFF3338at 180.346 kb on - strand, within GFF3338at 180.349 kb on + strand, within GFF3338at 180.349 kb on + strand, within GFF3338at 180.349 kb on + strand, within GFF3338at 180.349 kb on + strand, within GFF3338at 180.350 kb on - strand, within GFF3338at 180.350 kb on - strand, within GFF3338at 180.350 kb on - strand, within GFF3338at 180.351 kb on + strand, within GFF3338at 180.352 kb on - strand, within GFF3338at 180.473 kb on + strand, within GFF3338at 180.474 kb on - strand, within GFF3338at 180.474 kb on - strand, within GFF3338at 180.474 kb on - strand, within GFF3338at 180.474 kb on - strand, within GFF3338at 180.474 kb on - strand, within GFF3338at 180.495 kb on + strand, within GFF3338at 180.496 kb on - strand, within GFF3338at 180.496 kb on - strand, within GFF3338at 180.496 kb on - strand, within GFF3338at 180.600 kb on + strand, within GFF3338at 180.600 kb on + strand, within GFF3338at 180.601 kb on - strand, within GFF3338at 180.834 kb on + strand, within GFF3338at 180.861 kb on + strand, within GFF3338at 180.936 kb on - strand, within GFF3338at 181.197 kb on + strandat 181.197 kb on + strandat 181.197 kb on + strandat 181.200 kb on + strandat 181.200 kb on + strandat 181.201 kb on - strandat 181.201 kb on - strandat 181.201 kb on - strandat 181.201 kb on - strandat 181.201 kb on - strandat 181.201 kb on - strandat 181.574 kb on + strand, within GFF3339at 181.574 kb on + strand, within GFF3339at 181.575 kb on - strand, within GFF3339at 181.575 kb on - strand, within GFF3339at 181.575 kb on - strand, within GFF3339at 181.680 kb on + strand, within GFF3339at 181.680 kb on + strand, within GFF3339at 181.681 kb on - strand, within GFF3339at 181.681 kb on - strand, within GFF3339at 181.681 kb on - strand, within GFF3339at 181.681 kb on - strand, within GFF3339at 181.681 kb on - strand, within GFF3339at 181.726 kb on - strand, within GFF3339at 181.782 kb on + strand, within GFF3339at 181.783 kb on - strand, within GFF3339at 181.783 kb on - strand, within GFF3339at 181.911 kb on + strand, within GFF3339at 181.911 kb on + strand, within GFF3339at 181.912 kb on - strand, within GFF3339at 181.912 kb on - strand, within GFF3339at 181.912 kb on - strand, within GFF3339at 181.914 kb on + strand, within GFF3339at 181.914 kb on + strand, within GFF3339at 181.914 kb on + strand, within GFF3339at 181.915 kb on - strand, within GFF3339at 181.915 kb on - strand, within GFF3339

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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179,030 - GFF3337 0.33 -0.7
179,030 - GFF3337 0.33 -0.6
179,067 - GFF3337 0.35 -1.0
179,067 - GFF3337 0.35 +0.9
179,067 - GFF3337 0.35 +0.0
179,067 - GFF3337 0.35 -1.4
179,216 + GFF3337 0.47 -0.1
179,216 + GFF3337 0.47 +1.5
179,216 + GFF3337 0.47 +0.8
179,217 - GFF3337 0.47 -1.8
179,217 - GFF3337 0.47 +0.2
179,297 + GFF3337 0.53 -0.6
179,297 + GFF3337 0.53 -0.3
179,297 + GFF3337 0.53 -0.6
179,297 + GFF3337 0.53 +0.4
179,298 - GFF3337 0.53 -0.2
179,540 + GFF3337 0.71 -1.7
179,541 - GFF3337 0.71 +0.4
179,720 + GFF3337 0.84 -0.2
179,721 - GFF3337 0.84 -0.5
179,721 - GFF3337 0.84 +0.5
179,721 - GFF3337 0.84 -0.9
179,721 - GFF3337 0.84 -0.9
179,722 + GFF3337 0.84 -0.1
179,722 + GFF3337 0.84 +0.2
179,722 + GFF3337 0.84 -1.1
179,835 - +0.4
179,932 - -0.0
180,129 + GFF3338 0.11 -0.2
180,129 + GFF3338 0.11 +0.3
180,130 - GFF3338 0.11 -1.0
180,130 - GFF3338 0.11 +0.4
180,200 - GFF3338 0.16 +0.2
180,200 - GFF3338 0.16 +0.2
180,294 + GFF3338 0.23 +0.3
180,294 + GFF3338 0.23 -1.8
180,294 + GFF3338 0.23 -0.3
180,295 - GFF3338 0.24 +0.5
180,295 - GFF3338 0.24 -0.4
180,295 - GFF3338 0.24 +0.1
180,295 - GFF3338 0.24 -0.1
180,295 - GFF3338 0.24 -0.8
180,345 + GFF3338 0.27 -1.1
180,345 + GFF3338 0.27 +0.0
180,345 + GFF3338 0.27 +0.7
180,345 + GFF3338 0.27 +0.1
180,345 + GFF3338 0.27 -0.6
180,345 + GFF3338 0.27 -0.6
180,346 - GFF3338 0.27 -1.3
180,346 - GFF3338 0.27 -1.3
180,346 - GFF3338 0.27 +0.7
180,346 - GFF3338 0.27 -0.3
180,346 - GFF3338 0.27 +2.3
180,349 + GFF3338 0.28 -0.8
180,349 + GFF3338 0.28 +0.4
180,349 + GFF3338 0.28 -0.2
180,349 + GFF3338 0.28 -0.6
180,350 - GFF3338 0.28 -0.3
180,350 - GFF3338 0.28 +0.5
180,350 - GFF3338 0.28 -2.3
180,351 + GFF3338 0.28 -0.2
180,352 - GFF3338 0.28 -1.4
180,473 + GFF3338 0.37 -0.4
180,474 - GFF3338 0.37 +1.1
180,474 - GFF3338 0.37 -0.6
180,474 - GFF3338 0.37 -0.3
180,474 - GFF3338 0.37 +0.2
180,474 - GFF3338 0.37 +1.1
180,495 + GFF3338 0.39 +0.1
180,496 - GFF3338 0.39 +0.9
180,496 - GFF3338 0.39 +0.2
180,496 - GFF3338 0.39 +0.6
180,600 + GFF3338 0.46 -0.7
180,600 + GFF3338 0.46 +0.0
180,601 - GFF3338 0.46 -0.3
180,834 + GFF3338 0.64 -0.2
180,861 + GFF3338 0.66 +0.6
180,936 - GFF3338 0.72 +0.3
181,197 + -0.4
181,197 + -0.5
181,197 + +0.9
181,200 + -0.3
181,200 + -0.2
181,201 - -0.3
181,201 - +0.7
181,201 - -0.7
181,201 - +0.2
181,201 - +0.8
181,201 - +0.2
181,574 + GFF3339 0.21 +0.5
181,574 + GFF3339 0.21 +0.6
181,575 - GFF3339 0.21 -0.2
181,575 - GFF3339 0.21 -1.4
181,575 - GFF3339 0.21 -1.5
181,680 + GFF3339 0.40 -1.1
181,680 + GFF3339 0.40 -0.9
181,681 - GFF3339 0.41 -0.0
181,681 - GFF3339 0.41 -0.1
181,681 - GFF3339 0.41 +0.0
181,681 - GFF3339 0.41 -0.6
181,681 - GFF3339 0.41 +0.4
181,726 - GFF3339 0.49 -0.6
181,782 + GFF3339 0.59 +0.0
181,783 - GFF3339 0.59 -0.3
181,783 - GFF3339 0.59 -0.4
181,911 + GFF3339 0.83 -0.3
181,911 + GFF3339 0.83 -1.4
181,912 - GFF3339 0.83 +0.7
181,912 - GFF3339 0.83 +0.1
181,912 - GFF3339 0.83 -1.5
181,914 + GFF3339 0.83 -0.6
181,914 + GFF3339 0.83 -1.1
181,914 + GFF3339 0.83 -0.2
181,915 - GFF3339 0.84 -1.3
181,915 - GFF3339 0.84 +0.2

Or see this region's nucleotide sequence