Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3333 and GFF3334 overlap by 4 nucleotides GFF3334 and GFF3335 are separated by 55 nucleotides GFF3335 and GFF3336 are separated by 104 nucleotides
GFF3333 - Acetophenone carboxylase delta subunit, at 174,028 to 175,770
GFF3333
GFF3334 - hypothetical protein, at 175,767 to 176,630
GFF3334
GFF3335 - hypothetical protein, at 176,686 to 177,420
GFF3335
GFF3336 - Homoserine kinase, at 177,525 to 178,592
GFF3336
Position (kb) 176
177
178 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 175.854 kb on + strand, within GFF3334 at 175.854 kb on + strand, within GFF3334 at 175.854 kb on + strand, within GFF3334 at 175.855 kb on - strand, within GFF3334 at 175.855 kb on - strand, within GFF3334 at 175.855 kb on - strand, within GFF3334 at 176.114 kb on + strand, within GFF3334 at 176.310 kb on + strand, within GFF3334 at 176.310 kb on + strand, within GFF3334 at 176.310 kb on + strand, within GFF3334 at 176.310 kb on + strand, within GFF3334 at 176.311 kb on - strand, within GFF3334 at 176.418 kb on + strand, within GFF3334 at 176.419 kb on - strand, within GFF3334 at 176.466 kb on + strand, within GFF3334 at 176.466 kb on + strand, within GFF3334 at 176.467 kb on - strand, within GFF3334 at 176.467 kb on - strand, within GFF3334 at 176.493 kb on + strand, within GFF3334 at 176.493 kb on + strand, within GFF3334 at 176.493 kb on + strand, within GFF3334 at 176.494 kb on - strand, within GFF3334 at 176.494 kb on - strand, within GFF3334 at 176.774 kb on - strand, within GFF3335 at 176.833 kb on + strand, within GFF3335 at 176.833 kb on + strand, within GFF3335 at 176.833 kb on + strand, within GFF3335 at 176.864 kb on - strand, within GFF3335 at 176.887 kb on + strand, within GFF3335 at 176.888 kb on - strand, within GFF3335 at 176.888 kb on - strand, within GFF3335 at 176.888 kb on - strand, within GFF3335 at 176.888 kb on - strand, within GFF3335 at 177.166 kb on + strand, within GFF3335 at 177.190 kb on + strand, within GFF3335 at 177.197 kb on - strand, within GFF3335 at 177.301 kb on + strand, within GFF3335 at 177.301 kb on + strand, within GFF3335 at 177.718 kb on + strand, within GFF3336 at 177.718 kb on + strand, within GFF3336 at 177.719 kb on - strand, within GFF3336 at 177.719 kb on - strand, within GFF3336 at 177.719 kb on - strand, within GFF3336 at 177.719 kb on - strand, within GFF3336 at 177.864 kb on + strand, within GFF3336 at 177.864 kb on + strand, within GFF3336 at 178.207 kb on - strand, within GFF3336
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 175,854 + GFF3334 0.10 +0.3 175,854 + GFF3334 0.10 +1.9 175,854 + GFF3334 0.10 -0.7 175,855 - GFF3334 0.10 -0.2 175,855 - GFF3334 0.10 +0.1 175,855 - GFF3334 0.10 +0.2 176,114 + GFF3334 0.40 -0.1 176,310 + GFF3334 0.63 +1.7 176,310 + GFF3334 0.63 +0.7 176,310 + GFF3334 0.63 +0.9 176,310 + GFF3334 0.63 -1.3 176,311 - GFF3334 0.63 +0.1 176,418 + GFF3334 0.75 -0.2 176,419 - GFF3334 0.75 +0.2 176,466 + GFF3334 0.81 -0.8 176,466 + GFF3334 0.81 +0.3 176,467 - GFF3334 0.81 +1.3 176,467 - GFF3334 0.81 +0.0 176,493 + GFF3334 0.84 -0.1 176,493 + GFF3334 0.84 -0.3 176,493 + GFF3334 0.84 +0.0 176,494 - GFF3334 0.84 -0.1 176,494 - GFF3334 0.84 -2.8 176,774 - GFF3335 0.12 -0.4 176,833 + GFF3335 0.20 -0.9 176,833 + GFF3335 0.20 -0.6 176,833 + GFF3335 0.20 -0.5 176,864 - GFF3335 0.24 -0.6 176,887 + GFF3335 0.27 +1.0 176,888 - GFF3335 0.27 -1.4 176,888 - GFF3335 0.27 +0.8 176,888 - GFF3335 0.27 -0.6 176,888 - GFF3335 0.27 +0.9 177,166 + GFF3335 0.65 -0.3 177,190 + GFF3335 0.69 +0.3 177,197 - GFF3335 0.70 +1.0 177,301 + GFF3335 0.84 -1.4 177,301 + GFF3335 0.84 -0.1 177,718 + GFF3336 0.18 +0.3 177,718 + GFF3336 0.18 +0.7 177,719 - GFF3336 0.18 +0.1 177,719 - GFF3336 0.18 -2.4 177,719 - GFF3336 0.18 +1.4 177,719 - GFF3336 0.18 -0.3 177,864 + GFF3336 0.32 +0.3 177,864 + GFF3336 0.32 -0.4 178,207 - GFF3336 0.64 +0.0
Or see this region's nucleotide sequence