Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3311 and GFF3312 are separated by 2 nucleotides GFF3312 and GFF3313 are separated by 11 nucleotides
GFF3311 - HTH-type transcriptional regulator NorG, at 149,976 to 151,391
GFF3311
GFF3312 - 4-sulfomuconolactone hydrolase, at 151,394 to 152,272
GFF3312
GFF3313 - L-arabonate dehydratase, at 152,284 to 154,005
GFF3313
Position (kb) 151
152
153 Strain fitness (log2 ratio) -2
-1
0
1 at 150.426 kb on + strand, within GFF3311 at 150.427 kb on - strand, within GFF3311 at 150.427 kb on - strand, within GFF3311 at 150.427 kb on - strand, within GFF3311 at 150.609 kb on + strand, within GFF3311 at 150.960 kb on + strand, within GFF3311 at 150.960 kb on + strand, within GFF3311 at 150.960 kb on + strand, within GFF3311 at 151.035 kb on + strand, within GFF3311 at 151.191 kb on + strand, within GFF3311 at 151.192 kb on - strand, within GFF3311 at 151.192 kb on - strand, within GFF3311 at 151.192 kb on - strand, within GFF3311 at 151.192 kb on - strand, within GFF3311 at 151.407 kb on + strand at 151.407 kb on + strand at 151.585 kb on - strand, within GFF3312 at 151.633 kb on - strand, within GFF3312 at 151.735 kb on + strand, within GFF3312 at 151.736 kb on - strand, within GFF3312 at 151.799 kb on + strand, within GFF3312 at 151.859 kb on + strand, within GFF3312 at 151.859 kb on + strand, within GFF3312 at 151.860 kb on - strand, within GFF3312 at 152.128 kb on - strand, within GFF3312 at 152.357 kb on + strand at 152.357 kb on + strand at 152.357 kb on + strand at 152.633 kb on + strand, within GFF3313 at 152.634 kb on - strand, within GFF3313 at 152.634 kb on - strand, within GFF3313 at 153.039 kb on + strand, within GFF3313 at 153.039 kb on + strand, within GFF3313 at 153.039 kb on + strand, within GFF3313 at 153.039 kb on + strand, within GFF3313 at 153.039 kb on + strand, within GFF3313 at 153.040 kb on - strand, within GFF3313 at 153.040 kb on - strand, within GFF3313 at 153.040 kb on - strand, within GFF3313 at 153.040 kb on - strand, within GFF3313 at 153.041 kb on + strand, within GFF3313 at 153.041 kb on + strand, within GFF3313 at 153.042 kb on - strand, within GFF3313 at 153.042 kb on - strand, within GFF3313 at 153.121 kb on + strand, within GFF3313 at 153.122 kb on - strand, within GFF3313
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 150,426 + GFF3311 0.32 -1.8 150,427 - GFF3311 0.32 +0.2 150,427 - GFF3311 0.32 -0.5 150,427 - GFF3311 0.32 +0.4 150,609 + GFF3311 0.45 -2.2 150,960 + GFF3311 0.69 +0.1 150,960 + GFF3311 0.69 -0.7 150,960 + GFF3311 0.69 +0.3 151,035 + GFF3311 0.75 +0.4 151,191 + GFF3311 0.86 -0.5 151,192 - GFF3311 0.86 -0.1 151,192 - GFF3311 0.86 -0.4 151,192 - GFF3311 0.86 -0.6 151,192 - GFF3311 0.86 +0.9 151,407 + -0.7 151,407 + -0.6 151,585 - GFF3312 0.22 -0.0 151,633 - GFF3312 0.27 +0.1 151,735 + GFF3312 0.39 +0.2 151,736 - GFF3312 0.39 +0.2 151,799 + GFF3312 0.46 -0.1 151,859 + GFF3312 0.53 -0.4 151,859 + GFF3312 0.53 -0.3 151,860 - GFF3312 0.53 -0.1 152,128 - GFF3312 0.84 -0.1 152,357 + +0.9 152,357 + +0.2 152,357 + +1.3 152,633 + GFF3313 0.20 -0.1 152,634 - GFF3313 0.20 -1.8 152,634 - GFF3313 0.20 -0.6 153,039 + GFF3313 0.44 -0.3 153,039 + GFF3313 0.44 -2.4 153,039 + GFF3313 0.44 -0.2 153,039 + GFF3313 0.44 +0.7 153,039 + GFF3313 0.44 -0.3 153,040 - GFF3313 0.44 -1.0 153,040 - GFF3313 0.44 -0.7 153,040 - GFF3313 0.44 -0.7 153,040 - GFF3313 0.44 -0.0 153,041 + GFF3313 0.44 -0.5 153,041 + GFF3313 0.44 +0.1 153,042 - GFF3313 0.44 -0.1 153,042 - GFF3313 0.44 -0.4 153,121 + GFF3313 0.49 -0.3 153,122 - GFF3313 0.49 -1.1
Or see this region's nucleotide sequence