Strain Fitness in Xanthobacter sp. DMC5 around GFF3258

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3257 and GFF3258 are separated by 58 nucleotidesGFF3258 and GFF3259 are separated by 387 nucleotides GFF3257 - hypothetical protein, at 87,745 to 88,770 GFF3257 GFF3258 - hypothetical protein, at 88,829 to 89,992 GFF3258 GFF3259 - hypothetical protein, at 90,380 to 91,483 GFF3259 Position (kb) 88 89 90Strain fitness (log2 ratio) -2 -1 0 1at 87.842 kb on - strandat 87.965 kb on + strand, within GFF3257at 87.965 kb on + strand, within GFF3257at 87.966 kb on - strand, within GFF3257at 88.097 kb on + strand, within GFF3257at 88.097 kb on + strand, within GFF3257at 88.097 kb on + strand, within GFF3257at 88.097 kb on + strand, within GFF3257at 88.097 kb on + strand, within GFF3257at 88.098 kb on - strand, within GFF3257at 88.098 kb on - strand, within GFF3257at 88.212 kb on + strand, within GFF3257at 88.213 kb on - strand, within GFF3257at 88.214 kb on + strand, within GFF3257at 88.214 kb on + strand, within GFF3257at 88.214 kb on + strand, within GFF3257at 88.215 kb on - strand, within GFF3257at 88.215 kb on - strand, within GFF3257at 88.215 kb on - strand, within GFF3257at 88.215 kb on - strand, within GFF3257at 88.337 kb on + strand, within GFF3257at 88.337 kb on + strand, within GFF3257at 88.337 kb on + strand, within GFF3257at 88.337 kb on + strand, within GFF3257at 88.337 kb on + strand, within GFF3257at 88.338 kb on - strand, within GFF3257at 88.338 kb on - strand, within GFF3257at 88.338 kb on - strand, within GFF3257at 88.491 kb on - strand, within GFF3257at 88.718 kb on + strandat 88.719 kb on - strandat 89.040 kb on + strand, within GFF3258at 89.041 kb on - strand, within GFF3258at 89.041 kb on - strand, within GFF3258at 89.087 kb on + strand, within GFF3258at 89.230 kb on - strand, within GFF3258at 89.362 kb on - strand, within GFF3258at 89.442 kb on + strand, within GFF3258at 89.442 kb on + strand, within GFF3258at 89.448 kb on + strand, within GFF3258at 89.449 kb on - strand, within GFF3258at 89.449 kb on - strand, within GFF3258at 89.673 kb on + strand, within GFF3258at 90.213 kb on + strandat 90.214 kb on - strandat 90.527 kb on + strand, within GFF3259at 90.528 kb on - strand, within GFF3259at 90.528 kb on - strand, within GFF3259at 90.528 kb on - strand, within GFF3259at 90.528 kb on - strand, within GFF3259at 90.629 kb on + strand, within GFF3259at 90.629 kb on + strand, within GFF3259at 90.629 kb on + strand, within GFF3259at 90.629 kb on + strand, within GFF3259at 90.851 kb on + strand, within GFF3259at 90.942 kb on - strand, within GFF3259at 90.942 kb on - strand, within GFF3259at 90.942 kb on - strand, within GFF3259

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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87,842 - -0.3
87,965 + GFF3257 0.21 -0.6
87,965 + GFF3257 0.21 -0.1
87,966 - GFF3257 0.22 -0.3
88,097 + GFF3257 0.34 -0.1
88,097 + GFF3257 0.34 -0.0
88,097 + GFF3257 0.34 -0.4
88,097 + GFF3257 0.34 -0.3
88,097 + GFF3257 0.34 +0.6
88,098 - GFF3257 0.34 +0.2
88,098 - GFF3257 0.34 +0.3
88,212 + GFF3257 0.46 +0.4
88,213 - GFF3257 0.46 -0.0
88,214 + GFF3257 0.46 -0.8
88,214 + GFF3257 0.46 +0.1
88,214 + GFF3257 0.46 -0.2
88,215 - GFF3257 0.46 +0.1
88,215 - GFF3257 0.46 +0.3
88,215 - GFF3257 0.46 -0.9
88,215 - GFF3257 0.46 +0.6
88,337 + GFF3257 0.58 -0.3
88,337 + GFF3257 0.58 -0.8
88,337 + GFF3257 0.58 +0.2
88,337 + GFF3257 0.58 -1.0
88,337 + GFF3257 0.58 -0.3
88,338 - GFF3257 0.58 +0.5
88,338 - GFF3257 0.58 -0.4
88,338 - GFF3257 0.58 -0.4
88,491 - GFF3257 0.73 -0.3
88,718 + +0.4
88,719 - +0.9
89,040 + GFF3258 0.18 -0.0
89,041 - GFF3258 0.18 -0.2
89,041 - GFF3258 0.18 +0.4
89,087 + GFF3258 0.22 +0.6
89,230 - GFF3258 0.34 +0.3
89,362 - GFF3258 0.46 +0.7
89,442 + GFF3258 0.53 -0.2
89,442 + GFF3258 0.53 +1.4
89,448 + GFF3258 0.53 +1.1
89,449 - GFF3258 0.53 +0.3
89,449 - GFF3258 0.53 -0.2
89,673 + GFF3258 0.73 +0.8
90,213 + +1.3
90,214 - +0.5
90,527 + GFF3259 0.13 -0.8
90,528 - GFF3259 0.13 +0.2
90,528 - GFF3259 0.13 +0.7
90,528 - GFF3259 0.13 -0.1
90,528 - GFF3259 0.13 -0.6
90,629 + GFF3259 0.23 +0.3
90,629 + GFF3259 0.23 -1.1
90,629 + GFF3259 0.23 -0.1
90,629 + GFF3259 0.23 -0.4
90,851 + GFF3259 0.43 -0.3
90,942 - GFF3259 0.51 -1.8
90,942 - GFF3259 0.51 -0.1
90,942 - GFF3259 0.51 -1.0

Or see this region's nucleotide sequence