Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF322 and GFF323 overlap by 4 nucleotides GFF323 and GFF324 overlap by 4 nucleotides GFF324 and GFF325 are separated by 11 nucleotides GFF325 and GFF326 overlap by 1 nucleotides GFF326 and GFF327 overlap by 4 nucleotides GFF327 and GFF328 overlap by 1 nucleotides
GFF322 - hypothetical protein, at 331,931 to 332,419
GFF322
GFF323 - hypothetical protein, at 332,416 to 332,757
GFF323
GFF324 - hypothetical protein, at 332,754 to 332,975
GFF324
GFF325 - hypothetical protein, at 332,987 to 333,475
GFF325
GFF326 - hypothetical protein, at 333,475 to 333,882
GFF326
GFF327 - hypothetical protein, at 333,879 to 334,199
GFF327
GFF328 - hypothetical protein, at 334,199 to 336,577
GFF328
Position (kb) 332
333
334 Strain fitness (log2 ratio) -2
-1
0
1 at 331.995 kb on + strand, within GFF322 at 331.996 kb on - strand, within GFF322 at 332.096 kb on - strand, within GFF322 at 332.133 kb on - strand, within GFF322 at 332.176 kb on - strand, within GFF322 at 332.176 kb on - strand, within GFF322 at 332.194 kb on + strand, within GFF322 at 332.195 kb on - strand, within GFF322 at 332.269 kb on + strand, within GFF322 at 332.270 kb on - strand, within GFF322 at 332.270 kb on - strand, within GFF322 at 332.270 kb on - strand, within GFF322 at 332.554 kb on + strand, within GFF323 at 332.554 kb on + strand, within GFF323 at 332.554 kb on + strand, within GFF323 at 332.554 kb on + strand, within GFF323 at 332.555 kb on - strand, within GFF323 at 332.555 kb on - strand, within GFF323 at 332.633 kb on - strand, within GFF323 at 332.769 kb on + strand at 332.770 kb on - strand at 332.973 kb on + strand at 332.974 kb on - strand at 332.995 kb on - strand at 333.013 kb on + strand at 333.192 kb on + strand, within GFF325 at 333.193 kb on - strand, within GFF325 at 333.233 kb on + strand, within GFF325 at 333.234 kb on - strand, within GFF325 at 333.287 kb on + strand, within GFF325 at 333.287 kb on + strand, within GFF325 at 333.288 kb on - strand, within GFF325 at 333.288 kb on - strand, within GFF325 at 333.288 kb on - strand, within GFF325 at 333.288 kb on - strand, within GFF325 at 333.288 kb on - strand, within GFF325 at 334.123 kb on - strand, within GFF327 at 334.349 kb on + strand at 334.349 kb on + strand at 334.350 kb on - strand at 334.350 kb on - strand at 334.350 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 331,995 + GFF322 0.13 +0.7 331,996 - GFF322 0.13 +0.1 332,096 - GFF322 0.34 -0.2 332,133 - GFF322 0.41 +0.9 332,176 - GFF322 0.50 +0.2 332,176 - GFF322 0.50 +0.6 332,194 + GFF322 0.54 -0.2 332,195 - GFF322 0.54 +0.2 332,269 + GFF322 0.69 +0.0 332,270 - GFF322 0.69 -0.4 332,270 - GFF322 0.69 +0.8 332,270 - GFF322 0.69 +0.5 332,554 + GFF323 0.40 -0.5 332,554 + GFF323 0.40 +0.6 332,554 + GFF323 0.40 -0.4 332,554 + GFF323 0.40 -0.8 332,555 - GFF323 0.41 +0.0 332,555 - GFF323 0.41 -0.0 332,633 - GFF323 0.63 -1.4 332,769 + -0.2 332,770 - -0.5 332,973 + +1.1 332,974 - -0.5 332,995 - -0.1 333,013 + +1.1 333,192 + GFF325 0.42 -0.3 333,193 - GFF325 0.42 -0.3 333,233 + GFF325 0.50 -1.1 333,234 - GFF325 0.51 +0.5 333,287 + GFF325 0.61 -0.2 333,287 + GFF325 0.61 -1.2 333,288 - GFF325 0.62 +0.9 333,288 - GFF325 0.62 -1.4 333,288 - GFF325 0.62 -0.5 333,288 - GFF325 0.62 +0.4 333,288 - GFF325 0.62 +1.3 334,123 - GFF327 0.76 +0.3 334,349 + -1.8 334,349 + -0.1 334,350 - -1.0 334,350 - -0.4 334,350 - -0.6
Or see this region's nucleotide sequence