Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3247 and GFF3248 overlap by 8 nucleotides GFF3248 and GFF3249 overlap by 4 nucleotides GFF3249 and GFF3250 are separated by 311 nucleotides
GFF3247 - Lipopolysaccharide export system ATP-binding protein LptB, at 76,937 to 77,686
GFF3247
GFF3248 - hypothetical protein, at 77,679 to 78,596
GFF3248
GFF3249 - High-affinity branched-chain amino acid transport system permease protein LivH, at 78,593 to 79,576
GFF3249
GFF3250 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 79,888 to 81,060
GFF3250
Position (kb) 78
79
80 Strain fitness (log2 ratio) -1
0
1 at 77.643 kb on + strand at 77.902 kb on + strand, within GFF3248 at 77.902 kb on + strand, within GFF3248 at 77.903 kb on - strand, within GFF3248 at 77.936 kb on - strand, within GFF3248 at 77.977 kb on + strand, within GFF3248 at 77.977 kb on + strand, within GFF3248 at 77.978 kb on - strand, within GFF3248 at 77.978 kb on - strand, within GFF3248 at 77.978 kb on - strand, within GFF3248 at 77.978 kb on - strand, within GFF3248 at 77.998 kb on + strand, within GFF3248 at 78.127 kb on + strand, within GFF3248 at 78.127 kb on + strand, within GFF3248 at 78.128 kb on - strand, within GFF3248 at 78.211 kb on + strand, within GFF3248 at 78.211 kb on + strand, within GFF3248 at 78.212 kb on - strand, within GFF3248 at 78.278 kb on - strand, within GFF3248 at 78.654 kb on + strand at 78.655 kb on - strand at 78.655 kb on - strand at 78.655 kb on - strand at 78.655 kb on - strand at 78.655 kb on - strand at 79.038 kb on + strand, within GFF3249 at 79.038 kb on + strand, within GFF3249 at 79.038 kb on + strand, within GFF3249 at 79.039 kb on - strand, within GFF3249 at 79.086 kb on + strand, within GFF3249 at 79.086 kb on + strand, within GFF3249 at 79.086 kb on + strand, within GFF3249 at 79.095 kb on + strand, within GFF3249 at 79.096 kb on - strand, within GFF3249 at 79.248 kb on + strand, within GFF3249 at 79.380 kb on + strand, within GFF3249 at 79.380 kb on + strand, within GFF3249 at 79.381 kb on - strand, within GFF3249 at 79.381 kb on - strand, within GFF3249 at 79.746 kb on + strand at 79.925 kb on + strand at 79.925 kb on + strand at 79.997 kb on + strand at 79.997 kb on + strand at 79.998 kb on - strand at 80.153 kb on + strand, within GFF3250 at 80.168 kb on + strand, within GFF3250 at 80.183 kb on + strand, within GFF3250 at 80.183 kb on + strand, within GFF3250 at 80.183 kb on + strand, within GFF3250 at 80.183 kb on + strand, within GFF3250 at 80.184 kb on - strand, within GFF3250 at 80.189 kb on + strand, within GFF3250 at 80.189 kb on + strand, within GFF3250 at 80.189 kb on + strand, within GFF3250 at 80.189 kb on + strand, within GFF3250 at 80.364 kb on - strand, within GFF3250 at 80.480 kb on + strand, within GFF3250 at 80.480 kb on + strand, within GFF3250 at 80.480 kb on + strand, within GFF3250 at 80.481 kb on - strand, within GFF3250 at 80.508 kb on - strand, within GFF3250 at 80.510 kb on + strand, within GFF3250 at 80.549 kb on + strand, within GFF3250
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 77,643 + -0.1 77,902 + GFF3248 0.24 -0.0 77,902 + GFF3248 0.24 -1.6 77,903 - GFF3248 0.24 -0.2 77,936 - GFF3248 0.28 +0.3 77,977 + GFF3248 0.32 +0.4 77,977 + GFF3248 0.32 -0.0 77,978 - GFF3248 0.33 +0.9 77,978 - GFF3248 0.33 -0.5 77,978 - GFF3248 0.33 +0.5 77,978 - GFF3248 0.33 -0.3 77,998 + GFF3248 0.35 -0.0 78,127 + GFF3248 0.49 +0.5 78,127 + GFF3248 0.49 -0.1 78,128 - GFF3248 0.49 -1.4 78,211 + GFF3248 0.58 +0.9 78,211 + GFF3248 0.58 +1.3 78,212 - GFF3248 0.58 +0.6 78,278 - GFF3248 0.65 -0.7 78,654 + +0.5 78,655 - +0.3 78,655 - +1.3 78,655 - +0.0 78,655 - -0.6 78,655 - -0.6 79,038 + GFF3249 0.45 -0.1 79,038 + GFF3249 0.45 +0.1 79,038 + GFF3249 0.45 -0.4 79,039 - GFF3249 0.45 +0.3 79,086 + GFF3249 0.50 +1.7 79,086 + GFF3249 0.50 -1.4 79,086 + GFF3249 0.50 -0.9 79,095 + GFF3249 0.51 +1.6 79,096 - GFF3249 0.51 -0.0 79,248 + GFF3249 0.67 -0.5 79,380 + GFF3249 0.80 -0.1 79,380 + GFF3249 0.80 +0.8 79,381 - GFF3249 0.80 +0.2 79,381 - GFF3249 0.80 -0.3 79,746 + -0.3 79,925 + +0.3 79,925 + +0.3 79,997 + +0.7 79,997 + -0.6 79,998 - +0.4 80,153 + GFF3250 0.23 +0.9 80,168 + GFF3250 0.24 -0.4 80,183 + GFF3250 0.25 +0.5 80,183 + GFF3250 0.25 -0.3 80,183 + GFF3250 0.25 -1.5 80,183 + GFF3250 0.25 +1.2 80,184 - GFF3250 0.25 +0.6 80,189 + GFF3250 0.26 +0.1 80,189 + GFF3250 0.26 +0.2 80,189 + GFF3250 0.26 +1.3 80,189 + GFF3250 0.26 +0.0 80,364 - GFF3250 0.41 -0.2 80,480 + GFF3250 0.50 +0.2 80,480 + GFF3250 0.50 -0.3 80,480 + GFF3250 0.50 -0.2 80,481 - GFF3250 0.51 -0.5 80,508 - GFF3250 0.53 +0.3 80,510 + GFF3250 0.53 +0.6 80,549 + GFF3250 0.56 -0.9
Or see this region's nucleotide sequence