Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3207 and GFF3208 are separated by 133 nucleotides GFF3208 and GFF3209 overlap by 4 nucleotides GFF3209 and GFF3210 are separated by 80 nucleotides GFF3210 and GFF3211 are separated by 39 nucleotides GFF3211 and GFF3212 are separated by 23 nucleotides
GFF3207 - hypothetical protein, at 32,491 to 32,778
GFF3207
GFF3208 - Transcriptional regulatory protein QseB, at 32,912 to 33,583
GFF3208
GFF3209 - Sensor protein QseC, at 33,580 to 34,929
GFF3209
GFF3210 - hypothetical protein, at 35,010 to 35,363
GFF3210
GFF3211 - hypothetical protein, at 35,403 to 35,873
GFF3211
GFF3212 - hypothetical protein, at 35,897 to 38,104
GFF3212
Position (kb) 33
34
35 Strain fitness (log2 ratio) -2
-1
0
1
2 at 32.917 kb on + strand at 32.918 kb on - strand at 32.918 kb on - strand at 33.267 kb on - strand, within GFF3208 at 33.397 kb on - strand, within GFF3208 at 33.446 kb on + strand, within GFF3208 at 33.447 kb on - strand, within GFF3208 at 33.488 kb on + strand, within GFF3208 at 33.488 kb on + strand, within GFF3208 at 33.488 kb on + strand, within GFF3208 at 33.488 kb on + strand, within GFF3208 at 33.488 kb on + strand, within GFF3208 at 33.489 kb on - strand, within GFF3208 at 33.489 kb on - strand, within GFF3208 at 33.489 kb on - strand, within GFF3208 at 33.489 kb on - strand, within GFF3208 at 33.489 kb on - strand, within GFF3208 at 33.489 kb on - strand, within GFF3208 at 33.751 kb on + strand, within GFF3209 at 33.752 kb on - strand, within GFF3209 at 33.752 kb on - strand, within GFF3209 at 33.832 kb on + strand, within GFF3209 at 33.832 kb on + strand, within GFF3209 at 33.832 kb on + strand, within GFF3209 at 33.832 kb on + strand, within GFF3209 at 33.832 kb on + strand, within GFF3209 at 33.832 kb on + strand, within GFF3209 at 33.832 kb on + strand, within GFF3209 at 33.833 kb on - strand, within GFF3209 at 33.833 kb on - strand, within GFF3209 at 33.833 kb on - strand, within GFF3209 at 33.833 kb on - strand, within GFF3209 at 33.833 kb on - strand, within GFF3209 at 33.833 kb on - strand, within GFF3209 at 33.946 kb on + strand, within GFF3209 at 34.835 kb on + strand at 34.836 kb on - strand at 35.396 kb on + strand at 35.502 kb on + strand, within GFF3211 at 35.502 kb on + strand, within GFF3211 at 35.502 kb on + strand, within GFF3211 at 35.520 kb on + strand, within GFF3211 at 35.520 kb on + strand, within GFF3211 at 35.520 kb on + strand, within GFF3211 at 35.521 kb on - strand, within GFF3211 at 35.532 kb on + strand, within GFF3211 at 35.532 kb on + strand, within GFF3211 at 35.533 kb on - strand, within GFF3211 at 35.556 kb on + strand, within GFF3211 at 35.557 kb on - strand, within GFF3211 at 35.557 kb on - strand, within GFF3211 at 35.595 kb on + strand, within GFF3211 at 35.598 kb on + strand, within GFF3211 at 35.844 kb on + strand at 35.844 kb on + strand at 35.844 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 32,917 + +0.8 32,918 - -0.5 32,918 - -1.1 33,267 - GFF3208 0.53 +1.1 33,397 - GFF3208 0.72 -0.3 33,446 + GFF3208 0.79 -0.2 33,447 - GFF3208 0.80 +1.5 33,488 + GFF3208 0.86 +0.4 33,488 + GFF3208 0.86 -0.5 33,488 + GFF3208 0.86 -1.2 33,488 + GFF3208 0.86 +0.3 33,488 + GFF3208 0.86 +0.0 33,489 - GFF3208 0.86 -0.8 33,489 - GFF3208 0.86 -1.4 33,489 - GFF3208 0.86 -0.3 33,489 - GFF3208 0.86 +1.9 33,489 - GFF3208 0.86 -0.0 33,489 - GFF3208 0.86 -1.3 33,751 + GFF3209 0.13 +0.1 33,752 - GFF3209 0.13 +0.3 33,752 - GFF3209 0.13 +0.7 33,832 + GFF3209 0.19 -0.8 33,832 + GFF3209 0.19 +0.5 33,832 + GFF3209 0.19 -0.6 33,832 + GFF3209 0.19 -0.4 33,832 + GFF3209 0.19 -2.2 33,832 + GFF3209 0.19 -0.3 33,832 + GFF3209 0.19 +0.8 33,833 - GFF3209 0.19 +0.0 33,833 - GFF3209 0.19 -0.5 33,833 - GFF3209 0.19 +1.7 33,833 - GFF3209 0.19 -1.4 33,833 - GFF3209 0.19 -0.1 33,833 - GFF3209 0.19 +0.3 33,946 + GFF3209 0.27 -0.1 34,835 + +0.2 34,836 - +0.3 35,396 + -0.9 35,502 + GFF3211 0.21 +0.4 35,502 + GFF3211 0.21 +0.2 35,502 + GFF3211 0.21 +0.1 35,520 + GFF3211 0.25 +0.2 35,520 + GFF3211 0.25 -0.3 35,520 + GFF3211 0.25 -0.4 35,521 - GFF3211 0.25 -0.9 35,532 + GFF3211 0.27 +0.1 35,532 + GFF3211 0.27 +1.0 35,533 - GFF3211 0.28 -0.9 35,556 + GFF3211 0.32 -0.1 35,557 - GFF3211 0.33 +1.3 35,557 - GFF3211 0.33 -0.1 35,595 + GFF3211 0.41 -0.3 35,598 + GFF3211 0.41 -0.2 35,844 + -0.2 35,844 + -0.5 35,844 + -0.5
Or see this region's nucleotide sequence