Strain Fitness in Xanthobacter sp. DMC5 around GFF316

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF314 and GFF315 are separated by 277 nucleotidesGFF315 and GFF316 overlap by 4 nucleotidesGFF316 and GFF317 are separated by 7 nucleotides GFF314 - hypothetical protein, at 324,925 to 325,281 GFF314 GFF315 - hypothetical protein, at 325,559 to 325,924 GFF315 GFF316 - hypothetical protein, at 325,921 to 327,636 GFF316 GFF317 - hypothetical protein, at 327,644 to 328,879 GFF317 Position (kb) 325 326 327 328Strain fitness (log2 ratio) -1 0 1 2at 324.922 kb on - strandat 324.922 kb on - strandat 324.922 kb on - strandat 325.048 kb on + strand, within GFF314at 325.048 kb on + strand, within GFF314at 325.049 kb on - strand, within GFF314at 325.049 kb on - strand, within GFF314at 325.049 kb on - strand, within GFF314at 325.049 kb on - strand, within GFF314at 325.331 kb on + strandat 325.332 kb on - strandat 325.332 kb on - strandat 325.332 kb on - strandat 325.332 kb on - strandat 325.892 kb on + strandat 325.892 kb on + strandat 325.892 kb on + strandat 325.892 kb on + strandat 325.892 kb on + strandat 325.892 kb on + strandat 325.892 kb on + strandat 325.893 kb on - strandat 325.893 kb on - strandat 325.893 kb on - strandat 325.893 kb on - strandat 325.893 kb on - strandat 325.893 kb on - strandat 326.344 kb on + strand, within GFF316at 326.344 kb on + strand, within GFF316at 326.653 kb on + strand, within GFF316at 326.653 kb on + strand, within GFF316at 326.653 kb on + strand, within GFF316at 326.654 kb on - strand, within GFF316at 326.654 kb on - strand, within GFF316at 326.713 kb on + strand, within GFF316at 326.982 kb on + strand, within GFF316at 326.982 kb on + strand, within GFF316at 326.982 kb on + strand, within GFF316at 327.072 kb on + strand, within GFF316at 327.073 kb on - strand, within GFF316at 327.073 kb on - strand, within GFF316at 327.373 kb on + strand, within GFF316at 327.373 kb on + strand, within GFF316at 327.373 kb on + strand, within GFF316at 327.373 kb on + strand, within GFF316at 327.374 kb on - strand, within GFF316at 327.374 kb on - strand, within GFF316at 327.502 kb on + strandat 327.503 kb on - strandat 327.503 kb on - strandat 327.553 kb on + strandat 327.607 kb on + strandat 327.608 kb on - strandat 328.106 kb on + strand, within GFF317at 328.106 kb on + strand, within GFF317at 328.106 kb on + strand, within GFF317at 328.106 kb on + strand, within GFF317at 328.106 kb on + strand, within GFF317at 328.107 kb on - strand, within GFF317at 328.107 kb on - strand, within GFF317at 328.107 kb on - strand, within GFF317at 328.112 kb on + strand, within GFF317at 328.113 kb on - strand, within GFF317at 328.157 kb on - strand, within GFF317at 328.178 kb on - strand, within GFF317at 328.230 kb on + strand, within GFF317at 328.230 kb on + strand, within GFF317at 328.231 kb on - strand, within GFF317at 328.231 kb on - strand, within GFF317at 328.231 kb on - strand, within GFF317at 328.334 kb on + strand, within GFF317at 328.334 kb on + strand, within GFF317at 328.334 kb on + strand, within GFF317at 328.334 kb on + strand, within GFF317at 328.335 kb on - strand, within GFF317at 328.335 kb on - strand, within GFF317at 328.418 kb on + strand, within GFF317at 328.418 kb on + strand, within GFF317at 328.418 kb on + strand, within GFF317at 328.419 kb on - strand, within GFF317at 328.419 kb on - strand, within GFF317at 328.419 kb on - strand, within GFF317at 328.461 kb on - strand, within GFF317at 328.583 kb on + strand, within GFF317at 328.583 kb on + strand, within GFF317at 328.583 kb on + strand, within GFF317

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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324,922 - +0.2
324,922 - +0.2
324,922 - +0.2
325,048 + GFF314 0.34 +0.4
325,048 + GFF314 0.34 -0.7
325,049 - GFF314 0.35 +0.1
325,049 - GFF314 0.35 +1.8
325,049 - GFF314 0.35 -0.9
325,049 - GFF314 0.35 -0.2
325,331 + -0.6
325,332 - -0.9
325,332 - +0.3
325,332 - +0.2
325,332 - -0.2
325,892 + +0.4
325,892 + -0.3
325,892 + -1.0
325,892 + +0.6
325,892 + +0.8
325,892 + -0.8
325,892 + -0.7
325,893 - -0.2
325,893 - -0.0
325,893 - -0.0
325,893 - +0.5
325,893 - -0.8
325,893 - +0.7
326,344 + GFF316 0.25 +0.1
326,344 + GFF316 0.25 +0.9
326,653 + GFF316 0.43 -0.4
326,653 + GFF316 0.43 +1.1
326,653 + GFF316 0.43 +0.1
326,654 - GFF316 0.43 -0.2
326,654 - GFF316 0.43 +0.2
326,713 + GFF316 0.46 -0.0
326,982 + GFF316 0.62 +0.1
326,982 + GFF316 0.62 +0.9
326,982 + GFF316 0.62 +0.9
327,072 + GFF316 0.67 -0.1
327,073 - GFF316 0.67 +0.1
327,073 - GFF316 0.67 -0.4
327,373 + GFF316 0.85 +0.2
327,373 + GFF316 0.85 +0.2
327,373 + GFF316 0.85 -0.2
327,373 + GFF316 0.85 +1.0
327,374 - GFF316 0.85 +1.5
327,374 - GFF316 0.85 +0.7
327,502 + +1.5
327,503 - -0.5
327,503 - +0.1
327,553 + +0.5
327,607 + -0.8
327,608 - +1.0
328,106 + GFF317 0.37 +0.2
328,106 + GFF317 0.37 -0.4
328,106 + GFF317 0.37 +0.8
328,106 + GFF317 0.37 +0.5
328,106 + GFF317 0.37 -0.2
328,107 - GFF317 0.37 +0.3
328,107 - GFF317 0.37 +0.7
328,107 - GFF317 0.37 +0.3
328,112 + GFF317 0.38 +0.4
328,113 - GFF317 0.38 +1.1
328,157 - GFF317 0.42 +1.3
328,178 - GFF317 0.43 -0.9
328,230 + GFF317 0.47 -0.2
328,230 + GFF317 0.47 +0.5
328,231 - GFF317 0.47 +0.2
328,231 - GFF317 0.47 -0.1
328,231 - GFF317 0.47 +0.5
328,334 + GFF317 0.56 +0.5
328,334 + GFF317 0.56 +1.3
328,334 + GFF317 0.56 -0.5
328,334 + GFF317 0.56 -0.3
328,335 - GFF317 0.56 +0.6
328,335 - GFF317 0.56 -0.3
328,418 + GFF317 0.63 -0.8
328,418 + GFF317 0.63 +0.9
328,418 + GFF317 0.63 -0.2
328,419 - GFF317 0.63 -0.7
328,419 - GFF317 0.63 +0.5
328,419 - GFF317 0.63 -0.7
328,461 - GFF317 0.66 +0.8
328,583 + GFF317 0.76 +0.5
328,583 + GFF317 0.76 -0.2
328,583 + GFF317 0.76 -1.2

Or see this region's nucleotide sequence