Strain Fitness in Xanthobacter sp. DMC5 around GFF3121

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3120 and GFF3121 are separated by 123 nucleotidesGFF3121 and GFF3122 are separated by 263 nucleotides GFF3120 - Polyamine aminopropyltransferase, at 848,213 to 850,858 GFF3120 GFF3121 - hypothetical protein, at 850,982 to 852,916 GFF3121 GFF3122 - hypothetical protein, at 853,180 to 854,043 GFF3122 Position (kb) 850 851 852 853Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 850.002 kb on + strand, within GFF3120at 850.029 kb on + strand, within GFF3120at 850.029 kb on + strand, within GFF3120at 850.029 kb on + strand, within GFF3120at 850.030 kb on - strand, within GFF3120at 850.332 kb on + strand, within GFF3120at 850.332 kb on + strand, within GFF3120at 850.332 kb on + strand, within GFF3120at 850.332 kb on + strand, within GFF3120at 850.332 kb on + strand, within GFF3120at 850.333 kb on - strand, within GFF3120at 850.333 kb on - strand, within GFF3120at 850.333 kb on - strand, within GFF3120at 850.377 kb on - strand, within GFF3120at 850.578 kb on + strand, within GFF3120at 850.732 kb on - strandat 850.805 kb on + strandat 851.104 kb on - strandat 851.280 kb on + strand, within GFF3121at 851.280 kb on + strand, within GFF3121at 851.280 kb on + strand, within GFF3121at 851.280 kb on + strand, within GFF3121at 851.281 kb on - strand, within GFF3121at 851.281 kb on - strand, within GFF3121at 851.400 kb on + strand, within GFF3121at 851.400 kb on + strand, within GFF3121at 851.400 kb on + strand, within GFF3121at 851.401 kb on - strand, within GFF3121at 851.401 kb on - strand, within GFF3121at 851.526 kb on + strand, within GFF3121at 851.526 kb on + strand, within GFF3121at 851.526 kb on + strand, within GFF3121at 851.649 kb on + strand, within GFF3121at 851.649 kb on + strand, within GFF3121at 851.649 kb on + strand, within GFF3121at 851.650 kb on - strand, within GFF3121at 851.650 kb on - strand, within GFF3121at 851.650 kb on - strand, within GFF3121at 851.689 kb on - strand, within GFF3121at 851.689 kb on - strand, within GFF3121at 851.689 kb on - strand, within GFF3121at 851.763 kb on + strand, within GFF3121at 851.764 kb on - strand, within GFF3121at 851.764 kb on - strand, within GFF3121at 851.764 kb on - strand, within GFF3121at 851.788 kb on - strand, within GFF3121at 851.814 kb on + strand, within GFF3121at 851.815 kb on - strand, within GFF3121at 851.919 kb on + strand, within GFF3121at 851.920 kb on - strand, within GFF3121at 851.920 kb on - strand, within GFF3121at 851.989 kb on - strand, within GFF3121at 852.148 kb on - strand, within GFF3121at 852.150 kb on + strand, within GFF3121at 852.150 kb on + strand, within GFF3121at 852.151 kb on - strand, within GFF3121at 852.151 kb on - strand, within GFF3121at 852.165 kb on + strand, within GFF3121at 852.252 kb on + strand, within GFF3121at 852.253 kb on + strand, within GFF3121at 852.253 kb on + strand, within GFF3121at 852.254 kb on - strand, within GFF3121at 852.474 kb on + strand, within GFF3121at 852.474 kb on + strand, within GFF3121at 852.475 kb on - strand, within GFF3121at 852.475 kb on - strand, within GFF3121at 852.727 kb on - strandat 852.813 kb on + strandat 852.813 kb on + strandat 852.814 kb on - strandat 852.814 kb on - strandat 852.814 kb on - strandat 852.814 kb on - strandat 852.814 kb on - strandat 852.814 kb on - strandat 852.969 kb on - strandat 852.969 kb on - strandat 853.118 kb on + strandat 853.119 kb on - strandat 853.200 kb on + strandat 853.200 kb on + strandat 853.201 kb on - strandat 853.383 kb on - strand, within GFF3122at 853.609 kb on + strand, within GFF3122at 853.609 kb on + strand, within GFF3122at 853.630 kb on + strand, within GFF3122at 853.900 kb on + strand, within GFF3122at 853.900 kb on + strand, within GFF3122at 853.900 kb on + strand, within GFF3122at 853.900 kb on + strand, within GFF3122at 853.901 kb on - strand, within GFF3122at 853.901 kb on - strand, within GFF3122at 853.901 kb on - strand, within GFF3122at 853.901 kb on - strand, within GFF3122at 853.901 kb on - strand, within GFF3122at 853.901 kb on - strand, within GFF3122at 853.901 kb on - strand, within GFF3122at 853.902 kb on + strand, within GFF3122at 853.902 kb on + strand, within GFF3122at 853.902 kb on + strand, within GFF3122at 853.902 kb on + strand, within GFF3122at 853.902 kb on + strand, within GFF3122at 853.902 kb on + strand, within GFF3122at 853.903 kb on - strand, within GFF3122at 853.903 kb on - strand, within GFF3122at 853.903 kb on - strand, within GFF3122at 853.903 kb on - strand, within GFF3122

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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850,002 + GFF3120 0.68 +0.0
850,029 + GFF3120 0.69 +0.5
850,029 + GFF3120 0.69 +0.5
850,029 + GFF3120 0.69 +1.5
850,030 - GFF3120 0.69 -0.5
850,332 + GFF3120 0.80 -0.4
850,332 + GFF3120 0.80 +0.3
850,332 + GFF3120 0.80 +0.2
850,332 + GFF3120 0.80 +0.6
850,332 + GFF3120 0.80 +0.3
850,333 - GFF3120 0.80 -1.0
850,333 - GFF3120 0.80 -0.2
850,333 - GFF3120 0.80 -1.1
850,377 - GFF3120 0.82 +1.1
850,578 + GFF3120 0.89 +0.2
850,732 - -0.2
850,805 + +1.1
851,104 - -0.2
851,280 + GFF3121 0.15 +0.2
851,280 + GFF3121 0.15 -0.0
851,280 + GFF3121 0.15 +0.5
851,280 + GFF3121 0.15 +1.4
851,281 - GFF3121 0.15 -0.2
851,281 - GFF3121 0.15 -0.2
851,400 + GFF3121 0.22 -0.4
851,400 + GFF3121 0.22 -0.4
851,400 + GFF3121 0.22 -0.4
851,401 - GFF3121 0.22 -0.0
851,401 - GFF3121 0.22 -0.5
851,526 + GFF3121 0.28 +1.3
851,526 + GFF3121 0.28 -0.2
851,526 + GFF3121 0.28 +0.0
851,649 + GFF3121 0.34 -0.3
851,649 + GFF3121 0.34 +0.0
851,649 + GFF3121 0.34 -0.1
851,650 - GFF3121 0.35 -0.8
851,650 - GFF3121 0.35 +0.3
851,650 - GFF3121 0.35 +0.4
851,689 - GFF3121 0.37 +0.8
851,689 - GFF3121 0.37 +0.1
851,689 - GFF3121 0.37 +0.7
851,763 + GFF3121 0.40 -0.2
851,764 - GFF3121 0.40 -0.9
851,764 - GFF3121 0.40 -1.2
851,764 - GFF3121 0.40 -0.1
851,788 - GFF3121 0.42 -1.2
851,814 + GFF3121 0.43 -1.7
851,815 - GFF3121 0.43 -0.5
851,919 + GFF3121 0.48 -0.2
851,920 - GFF3121 0.48 -0.4
851,920 - GFF3121 0.48 +1.0
851,989 - GFF3121 0.52 -0.9
852,148 - GFF3121 0.60 -0.2
852,150 + GFF3121 0.60 +0.1
852,150 + GFF3121 0.60 +0.8
852,151 - GFF3121 0.60 -0.7
852,151 - GFF3121 0.60 +0.3
852,165 + GFF3121 0.61 -0.0
852,252 + GFF3121 0.66 +0.2
852,253 + GFF3121 0.66 +0.1
852,253 + GFF3121 0.66 +1.6
852,254 - GFF3121 0.66 +0.5
852,474 + GFF3121 0.77 -2.6
852,474 + GFF3121 0.77 -0.5
852,475 - GFF3121 0.77 -0.2
852,475 - GFF3121 0.77 +0.7
852,727 - -0.2
852,813 + -0.1
852,813 + +0.1
852,814 - -0.4
852,814 - -0.5
852,814 - -0.5
852,814 - -1.0
852,814 - -0.9
852,814 - -0.7
852,969 - -1.5
852,969 - -1.4
853,118 + +0.8
853,119 - +0.8
853,200 + -2.8
853,200 + -0.5
853,201 - +0.2
853,383 - GFF3122 0.23 -1.0
853,609 + GFF3122 0.50 -0.2
853,609 + GFF3122 0.50 +0.8
853,630 + GFF3122 0.52 +2.8
853,900 + GFF3122 0.83 +0.4
853,900 + GFF3122 0.83 -0.1
853,900 + GFF3122 0.83 +0.6
853,900 + GFF3122 0.83 +0.1
853,901 - GFF3122 0.83 +1.2
853,901 - GFF3122 0.83 +0.4
853,901 - GFF3122 0.83 +0.1
853,901 - GFF3122 0.83 -2.0
853,901 - GFF3122 0.83 -1.7
853,901 - GFF3122 0.83 -0.1
853,901 - GFF3122 0.83 -0.6
853,902 + GFF3122 0.84 +0.3
853,902 + GFF3122 0.84 +0.1
853,902 + GFF3122 0.84 +0.7
853,902 + GFF3122 0.84 +0.0
853,902 + GFF3122 0.84 +0.6
853,902 + GFF3122 0.84 -0.2
853,903 - GFF3122 0.84 +0.8
853,903 - GFF3122 0.84 -0.1
853,903 - GFF3122 0.84 -0.1
853,903 - GFF3122 0.84 -0.3

Or see this region's nucleotide sequence