Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3050 and GFF3051 are separated by 71 nucleotides GFF3051 and GFF3052 are separated by 153 nucleotides GFF3052 and GFF3053 are separated by 366 nucleotides
GFF3050 - Cold shock protein CspA, at 780,825 to 781,031
GFF3050
GFF3051 - hypothetical protein, at 781,103 to 781,687
GFF3051
GFF3052 - AB hydrolase superfamily protein YdjP, at 781,841 to 782,701
GFF3052
GFF3053 - hypothetical protein, at 783,068 to 784,381
GFF3053
Position (kb) 781
782
783 Strain fitness (log2 ratio) -1
0
1 at 780.942 kb on + strand, within GFF3050 at 780.943 kb on - strand, within GFF3050 at 781.116 kb on + strand at 781.116 kb on + strand at 781.117 kb on - strand at 781.146 kb on + strand at 781.240 kb on - strand, within GFF3051 at 781.257 kb on + strand, within GFF3051 at 781.258 kb on - strand, within GFF3051 at 781.258 kb on - strand, within GFF3051 at 781.302 kb on + strand, within GFF3051 at 781.302 kb on + strand, within GFF3051 at 781.302 kb on + strand, within GFF3051 at 781.303 kb on - strand, within GFF3051 at 781.384 kb on + strand, within GFF3051 at 781.455 kb on - strand, within GFF3051 at 781.455 kb on - strand, within GFF3051 at 781.462 kb on - strand, within GFF3051 at 781.843 kb on - strand at 782.076 kb on + strand, within GFF3052 at 782.077 kb on - strand, within GFF3052 at 782.370 kb on + strand, within GFF3052 at 782.370 kb on + strand, within GFF3052 at 782.509 kb on - strand, within GFF3052 at 782.738 kb on + strand at 782.738 kb on + strand at 782.739 kb on - strand at 782.761 kb on - strand at 782.761 kb on - strand at 783.007 kb on + strand at 783.377 kb on + strand, within GFF3053 at 783.378 kb on - strand, within GFF3053 at 783.378 kb on - strand, within GFF3053 at 783.422 kb on + strand, within GFF3053 at 783.423 kb on - strand, within GFF3053 at 783.423 kb on - strand, within GFF3053 at 783.423 kb on - strand, within GFF3053 at 783.674 kb on + strand, within GFF3053 at 783.675 kb on - strand, within GFF3053
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 780,942 + GFF3050 0.57 -1.1 780,943 - GFF3050 0.57 -0.5 781,116 + -0.1 781,116 + -0.2 781,117 - +0.5 781,146 + +0.1 781,240 - GFF3051 0.23 +0.3 781,257 + GFF3051 0.26 +0.4 781,258 - GFF3051 0.26 -0.1 781,258 - GFF3051 0.26 +0.7 781,302 + GFF3051 0.34 +1.6 781,302 + GFF3051 0.34 +0.4 781,302 + GFF3051 0.34 +0.5 781,303 - GFF3051 0.34 +0.2 781,384 + GFF3051 0.48 +0.2 781,455 - GFF3051 0.60 +0.1 781,455 - GFF3051 0.60 -0.4 781,462 - GFF3051 0.61 -0.1 781,843 - -0.3 782,076 + GFF3052 0.27 -0.3 782,077 - GFF3052 0.27 +0.3 782,370 + GFF3052 0.61 -0.4 782,370 + GFF3052 0.61 +0.6 782,509 - GFF3052 0.78 +0.5 782,738 + +0.3 782,738 + +0.4 782,739 - -0.3 782,761 - +1.3 782,761 - -0.2 783,007 + -0.3 783,377 + GFF3053 0.24 -0.6 783,378 - GFF3053 0.24 -0.4 783,378 - GFF3053 0.24 +0.3 783,422 + GFF3053 0.27 -0.3 783,423 - GFF3053 0.27 -0.7 783,423 - GFF3053 0.27 -0.2 783,423 - GFF3053 0.27 +0.7 783,674 + GFF3053 0.46 +0.4 783,675 - GFF3053 0.46 +1.6
Or see this region's nucleotide sequence